Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11c19
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 97 2e-21
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 97 3e-21
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 75 1e-14
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 68 1e-12
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 66 5e-12
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 48 2e-06
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 30 0.28
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 30 0.36
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.48
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 29 0.48
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 29 0.64
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 27 2.6
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.6
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.6
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 27 3.4
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 26 4.5
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 4.5
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 4.5
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 26 4.5
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 7.9
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 97.5 bits (232), Expect = 2e-21
Identities = 52/169 (30%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
Frame = -1
Query: 630 GVKPDIVTMAKGIGNGFPLAAVVTTKEI--AANHAKAAYFNTFGGNPMASTVGKAVLEVI 457
G+ PDI+T++K +G G LAAV+T++EI ++ T +P+ + +G VL+V+
Sbjct: 270 GIVPDILTLSKSLGAGTALAAVITSEEIEKVCYDNGFVFYTTHASDPLPAAIGSTVLKVV 329
Query: 456 EEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVEL---VEPGTKTPLTTSK 286
+ + L + +K+ GE L+ L+ +HP+I DVRG GL+ G+E+ +P + +
Sbjct: 330 KRDNLVEKAKISGELLRSDLLRLKDKHPLIVDVRGLGLLQGIEIASCTDPSKPSDFLGTV 389
Query: 285 VNDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAI 139
+ D + N ++ G VFRI PP+ +T +++ I I + A+
Sbjct: 390 IGDKCLELGMNCNIVHLRG-IGGVFRIAPPLTVTDEEIHKAIEIFDSAL 437
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 96.7 bits (230), Expect = 3e-21
Identities = 57/166 (34%), Positives = 98/166 (59%), Gaps = 1/166 (0%)
Frame = -1
Query: 633 TGVKPDIVTMAKGIGNG-FPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVI 457
+ VKPD+V + K I G +P++AV++++EI N + +T+GGNP+ + V A LEV+
Sbjct: 264 SNVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGGNPLGAAVSIAALEVV 323
Query: 456 EEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVND 277
+EE L + + V+GE F L++ + P++ VRG+GL+ V + E +KT T+ D
Sbjct: 324 KEEKLTERAAVLGEKFRTALIECKS--PIVQKVRGRGLLNAVVIDE--SKTNGRTAW--D 377
Query: 276 IHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAI 139
+ ++ GVL N+ R PP+ IT++D+ GI +I ++
Sbjct: 378 LCLIMRSRGVLAK--PTHGNIIRFSPPLVITEEDLMKGIEVIKKSL 421
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 74.5 bits (175), Expect = 1e-14
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Frame = -1
Query: 621 PDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGL 442
PDI+T+AK + NG P+ A + + +IAA + +TFGGNP+A VG + + +
Sbjct: 287 PDIITVAKPLANGLPIGATIVSSKIAAEIHPGEHGSTFGGNPVACRVGTFCVNELGSSKI 346
Query: 441 QQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHEN 265
QN + + + D ++P +I G+GL++G++ EP K E
Sbjct: 347 LQNVRKQHKALTSRFDDFVAKYPNLIRGYAGRGLLLGLQFTEPPAK----------FIEL 396
Query: 264 IKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAIK 136
+ G+L+ GG NN R+ P + + + + G+ I+ +K
Sbjct: 397 ARQQGLLLLPGG--NNNTRVLPSLNVKDEVIAKGLDIMESTLK 437
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 68.1 bits (159), Expect = 1e-12
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Frame = -1
Query: 645 ASRRTGVKPDIVTMAKGIGNGF-PLAAVVTTKEIA----ANHAKAAYFNTFGGNPMASTV 481
A + GV PDI ++AK +G G+ P++ + I A A F T+ +P+A +
Sbjct: 270 AWEQEGVTPDIQSIAKCLGGGYQPISGALVGHRIMNVFEQKDAAMAGFFTYQAHPIACSA 329
Query: 480 GKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELV-EPGTKT 304
AV ++ + L + + +G+Y +L + HP +G++RG+GL G+E+V + TK
Sbjct: 330 ALAVQTILRRDHLVERAAEMGKYLSEKLHETFDSHPNVGNIRGRGLFWGLEIVKDKATKE 389
Query: 303 PLTTS-KVNDIHENIK-DNGVLIARG-----GRFNNVFRIKPPMCITKQDVDFGISIIND 145
KV + I ++GV + G G + + PP IT++ +D + ++
Sbjct: 390 CFPPEYKVGSLANKIGCEHGVFVYPGMGTIDGTRGDHVLLAPPYIITREQIDELVEALSK 449
Query: 144 AIKKVV 127
I V
Sbjct: 450 TITSTV 455
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 66.1 bits (154), Expect = 5e-12
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Frame = -1
Query: 621 PDIVTMAKGIGNGF-PLAAVVTTKEI---AANHAKAAYFNT--FGGNPMASTVGKAVLEV 460
PD + AKG G P A + T+E+ A N + A+ +T + N + G A ++
Sbjct: 298 PDCIAFAKGFSGGLIPFAGYIATEELWNAAYNSLETAFLHTATYQENTLGLAAGVATIDY 357
Query: 459 IEEEGLQQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQGLMIGVEL------VEPGTKTP 301
I + L + +G +L LQ + P V+ DVRG+G+++G+E V+
Sbjct: 358 IVQNDLLSRCRKLGGIMFDRLNKLQTKFPHVMKDVRGRGMIVGIEFYPIPESVQEEFGEY 417
Query: 300 LTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAIKK 133
T VND+ + V + +VFR PP+ I + D+D G+S + A+ K
Sbjct: 418 YATPIVNDLADTYH---VQVYCSLNNPSVFRFLPPLTIPEADLDEGLSAVESAVAK 470
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 47.6 bits (108), Expect = 2e-06
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = -1
Query: 621 PDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGL 442
PD+VT +K AA + ++A +FNT+ G+P + + +L+ I+++ L
Sbjct: 326 PDMVTFSKKFQ-----AAGIFYHDLALRPHAYQHFNTWMGDPFRAVQSRYILQEIQDKDL 380
Query: 441 QQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQG 346
N K VG++ L +L ++HP I ++RG+G
Sbjct: 381 LNNVKSVGDFLYAGLEELARKHPGKINNLRGKG 413
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.28
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 191 HIGGFILNT--LLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRPCPLTS 364
H G F++N L P T ++ T EV++GV+ S +P+ PLT
Sbjct: 105 HYGRFVMNLRKALTSTPNVTVTEATVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTI 164
Query: 365 PITGC 379
GC
Sbjct: 165 VCDGC 169
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.9 bits (64), Expect = 0.36
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 188 MHIGGFILNTLLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRP-CPLTS 364
MHI +LN LK PP ++S S I S S T V + PG + S P+ P P++
Sbjct: 195 MHIINLLLNGSLKSPPVSISP--SFIASAAS-TSSVSAPSQYPGLSRSPPVQAPNIPVSD 251
Query: 365 P 367
P
Sbjct: 252 P 252
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.5 bits (63), Expect = 0.48
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +1
Query: 133 FFDRIIDDRNAEVDV-----LFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDIINFGSG 297
F DR++D+ NAEV + + W Y+ I+ + + +D L++ GS
Sbjct: 699 FTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSK 758
Query: 298 QRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQLPDEVFADYLTV 435
+R L S +D++ + + N +++ + ++ + +Y TV
Sbjct: 759 RRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTV 804
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 29.5 bits (63), Expect = 0.48
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Frame = +1
Query: 241 DEHSVVFDIL-MDIIN------FGSGQR--CLSSGFNKLHSDHEALSPDIANHWVLLLK- 390
DEHS+ D++ +DI + FG G C G N L S N+ ++LL
Sbjct: 347 DEHSISRDLVSVDICHIFNEMIFGKGGHLHCDPHGGNVLIRSKPKNSKSPRNYEIVLLDH 406
Query: 391 --IHQLPDEVFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKVGSLRVIG 543
+P E+ DY + L FN F + VS E+ + + + G
Sbjct: 407 GLYRDIPHELQVDYANMWLNIINFNEKNLKFYAKKVANVSDENFPIFATAITG 459
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 29.1 bits (62), Expect = 0.64
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 229 STTSDEHSVVFD---ILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLL 387
S S+E SV+FD +L I++ S +S F +HS HE PDIA + +L
Sbjct: 776 SPDSEEGSVLFDDGELLCGILDKSSFG---ASAFGLVHSVHELYGPDIAGRLLSVL 828
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 284 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEI 105
L I I + T C+ V +MY N CA L+ ST + M K+ C+I +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 104 LARLKVFIFV 75
+ + V
Sbjct: 288 AISFSICVIV 297
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -1
Query: 585 GFPLAAV-VTTKEIAA---NHAKAAYFNTFGGNPMASTVGKAVLEVIEEE 448
GFP+ V T+ I + N A+ A + G P+ S++GKA+LE+ EE
Sbjct: 436 GFPVGFVNAVTRHIPSPRENAARKASQSYIG--PINSSIGKAILEMSREE 483
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 284 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEI 105
L I I + T C+ V +MY N CA L+ ST + M K+ C+I +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 104 LARLKVFIFV 75
+ + V
Sbjct: 288 AISFSICVIV 297
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 45 YSNNLKQCILYKNKNFQTGKDFYYTL 122
Y NL Q ++ K F +GK+ Y+TL
Sbjct: 352 YGVNLNQSVILKAIGFSSGKNEYHTL 377
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 627 VKPDIVTMAKGIGNGFPLAA 568
+KPD+ T+ K +G G P A
Sbjct: 261 LKPDLTTLGKYLGGGLPFGA 280
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 229 STTSDEHSVVFDILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQL 402
S T+ +HS + + N G++ +SS + SD PD H L+ K +QL
Sbjct: 121 SVTAHDHSDTSPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQHEKLVKKCNQL 178
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 169 VDVLFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDII 282
V +LF D W F++ + +ST++ E + D + ++
Sbjct: 195 VGILFEDDLWYFFNTLYMLSSTSAIEFAYFLDSIFTVV 232
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 302 GVLVPGSTSSTPIM-----RPCPLTSPITGCCF*RSINCLMKYSPTTLLFCCSPSSSI 460
G+L+ GST ++ I+ +P L +TG R I C+ + T + + C SSI
Sbjct: 145 GLLLSGSTDASLIVWDVSSQPSRLLYKLTGHS--RGIECITRQPNTDIFWTCGSESSI 200
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = +3
Query: 36 FPKYSNNLK---QCILY-KNKNFQTGKD 107
F S NL Q +LY KN+NFQTG +
Sbjct: 493 FDSLSRNLSLTVQTVLYLKNRNFQTGNE 520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,345
Number of Sequences: 5004
Number of extensions: 58337
Number of successful extensions: 206
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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