Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11c19
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10) 113 1e-25
SB_12565| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_48660| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 29 4.7
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 29 4.7
SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 28 8.3
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 28 8.3
>SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)
Length = 252
Score = 113 bits (272), Expect = 1e-25
Identities = 57/93 (61%), Positives = 70/93 (75%), Gaps = 2/93 (2%)
Frame = -1
Query: 627 VKPDIVTMAKGIGNGFPLAAVVTTKEIAANHAKA--AYFNTFGGNPMASTVGKAVLEVIE 454
V PDIVT+ K IGNG PLA VVTT EI+ + A AYFNT+GGNP++ VG AVL+VIE
Sbjct: 157 VVPDIVTLGKPIGNGHPLACVVTTPEISESFAATGMAYFNTYGGNPVSCAVGNAVLDVIE 216
Query: 453 EEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVR 355
EEGLQQ++ VG I +L LQ++HP+IGDVR
Sbjct: 217 EEGLQQHALKVGTQLIDKLKGLQQKHPLIGDVR 249
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 691 DGXXTXFXRTGDHFWGFET 635
D F R G+HFW FET
Sbjct: 136 DEVQVGFGRVGNHFWAFET 154
>SB_12565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/52 (57%), Positives = 40/52 (76%)
Frame = -1
Query: 510 FGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVR 355
+GGNP++ VG AVL+VIEEEGLQQ++ VG I +L LQ++H +IGDVR
Sbjct: 1 YGGNPVSCAVGNAVLDVIEEEGLQQHALEVGTQLIDKLKRLQQKHLLIGDVR 52
>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 56.4 bits (130), Expect = 2e-08
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Frame = -1
Query: 516 NTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQGLM 340
+T+GGNP+ + V L V+EEE L + S +G+ F L +QK +P V+ RG+GLM
Sbjct: 198 STYGGNPLGAKVAMEALRVLEEEKLSERSAELGKVF---LSAMQKLNPNVVELARGKGLM 254
Query: 339 IGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGI 160
+ + P + ++DNG+L +++ R PP+ IT+ + I
Sbjct: 255 NAIVI------KPSDDCNAWKVCLRLRDNGLLAK--PTHDHIIRFTPPLVITEDQLQESI 306
Query: 159 SIINDAIK 136
II ++
Sbjct: 307 GIIKSTVE 314
>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = -1
Query: 459 IEEEGLQQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQGLMIGVELV 322
I+ EGLQ+N VG F+R L LQ + P +GDVRG+GLM G+ELV
Sbjct: 288 IDNEGLQENCSTVGTRFLRGLRKLQDEFPDFVGDVRGKGLMTGMELV 334
>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = -1
Query: 519 FNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQGL 343
FNT+ G+P + + VL+VI ++ L + + VG+ ++ L ++++HP + RG G
Sbjct: 302 FNTWMGDPNKMILLREVLKVIRKDNLIEYTADVGKELLKGLQYIEERHPEFVSKARGLGT 361
Query: 342 MIGVELVEPGTKT 304
G++L + T+T
Sbjct: 362 FCGIDLPDLETRT 374
>SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 303 PLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISI 154
P TSK +IH+N D+ + I GG+ V P ++ + +FG+++
Sbjct: 178 PFKTSKGFNIHQNWNDDEIFILLGGKSKPVRFEVNPTSLSLLESEFGLNL 227
>SB_48660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 303 PLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISI 154
P TSK +IH+N D+ + I GG+ V P ++ + +FG+++
Sbjct: 117 PFKTSKGFNIHQNWNDDEIFILLGGKSKPVRFEVNPTSLSLLESEFGLNL 166
>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 1139
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 191 HIGGFILNTLLKRPPRAMSTPLSLIFSWISLTLEVVSGVLV----PGSTSSTPIMRPCPL 358
H IL++ KRP +TP++ + L SG+L P ++TPI
Sbjct: 166 HTNSVILSSR-KRPAPITTTPITTTITNHRLNCHTNSGILSSRKRPAPITTTPITTTPIT 224
Query: 359 TSPITGCCF*RSINC 403
T+PIT +NC
Sbjct: 225 TTPITTTITNHRLNC 239
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 323 TSSTPIMRPCPLT--SPITGCCF*RSINCLMKYSPTTLLFCCSPSSSITS 466
TSS+P+ P PLT SP+T S + L SP T + SS +TS
Sbjct: 180 TSSSPLTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSPLTS 229
>SB_6395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1093
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 228 RFNNVFRIKPPMCITKQDVDFGISIINDAIKKVVN*VCNRNP 103
R + V RI T+Q + F I D KKV+N + NR+P
Sbjct: 844 RIDKVIRIGRYERKTRQILSFSIETEYDLHKKVINFITNRHP 885
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 263 IFSWISLTLEVVSGV--LVPGSTSSTPIMRPCPLTSPITGCCF*RSINCLMKYSPTTLLF 436
+FS I L + V S + L+P S SS+ PC +S + C + L+ SP++
Sbjct: 1181 VFSVIILFITVFSIIILLLPCSPSSS-FSLPCSPSSFLLPCS---PSSFLLPCSPSSFSL 1236
Query: 437 CCSPSSS 457
CSPSSS
Sbjct: 1237 PCSPSSS 1243
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -1
Query: 459 IEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELVEPGTKTPLTT 292
++++G Q +SK V R LM L+ ++ GL+ + EP T+ L T
Sbjct: 556 LQDDGDQTSSKGVKASKFRSLMYLKTLRSLVDPGEAVGLLAAQSIGEPSTQMTLNT 611
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,517,983
Number of Sequences: 59808
Number of extensions: 428267
Number of successful extensions: 1184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -