Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c19
         (693 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    27   0.74 
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    27   0.74 
DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide...    25   3.0  
AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical prote...    23   6.9  

>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 26.6 bits (56), Expect = 0.74
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -1

Query: 363 DVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIAR 235
           +VR   +  GV+L E G +     +KVNDI    KD+ V + R
Sbjct: 49  EVRNWAIRFGVDLWEFGRQF----TKVNDIRNRFKDSDVDVTR 87


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 26.6 bits (56), Expect = 0.74
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -1

Query: 690 MGXQPASVALEI-ISGASRRTGVKPDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFN 514
           M  Q A+ A  I  + A+  +  KPD  T A  + N F      +     AN+A   + +
Sbjct: 565 MASQAAAAAAAISAAAAAANSSFKPDFSTAA-AVANSFKSEQFSSAAAAVANYALGTFKS 623

Query: 513 TFGGNPMASTVGKA 472
            F   P +S    A
Sbjct: 624 DFPPIPNSSAAAAA 637


>DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide F
           receptor protein.
          Length = 575

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 12  VLYFSNYIFPKYSNNLKQCILYKNKNFQTGKDFYYT 119
           VLY S ++   + N L   ++++NK  QT  + + T
Sbjct: 100 VLYSSIFVLGVFGNVLVCYVVFRNKAMQTVTNLFIT 135


>AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical protein
           protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 392 SINCLMKYSPTTLLFCCSPSSSITS 466
           +++CL K SPT  +  C P S  T+
Sbjct: 147 NLDCLSKCSPTKCVPFCRPFSGQTA 171


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 697,141
Number of Sequences: 2352
Number of extensions: 15121
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)