Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11c19
(693 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 206 9e-54
U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical pr... 129 2e-30
U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical p... 85 5e-17
U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical p... 85 5e-17
Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical pr... 41 7e-04
Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical pr... 33 0.15
AL023834-2|CAA19479.2| 217|Caenorhabditis elegans Hypothetical ... 30 1.4
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p... 29 4.2
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ... 29 4.2
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ... 29 4.2
Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical pr... 27 9.6
U39653-4|AAL56624.1| 649|Caenorhabditis elegans Prion-like-(q/n... 27 9.6
AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich ... 27 9.6
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 206 bits (504), Expect = 9e-54
Identities = 103/163 (63%), Positives = 126/163 (77%)
Frame = -1
Query: 621 PDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGL 442
PD+VTMAKGIGNGFPL AVVT+KEIA + K+ YFNT+GGNP+AS VGKAVLEVIEEE L
Sbjct: 283 PDMVTMAKGIGNGFPLGAVVTSKEIADSFNKSLYFNTYGGNPLASVVGKAVLEVIEEEKL 342
Query: 441 QQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENI 262
Q+NS VVG+YF++QL + IGDVRG+GLMIGVEL++ K PL +K I E+
Sbjct: 343 QENSAVVGDYFLKQLAAI--DDATIGDVRGKGLMIGVELIDEQGK-PLAAAKTAAIFEDT 399
Query: 261 KDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAIKK 133
K+ G+LI +GG NV RIKPPMCITK+DVDF + II +IK+
Sbjct: 400 KNQGLLIGKGGIHGNVLRIKPPMCITKKDVDFAVDIIAKSIKQ 442
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 691 DGXXTXFXRTGDHFWGFET 635
D T F R G HFWGFE+
Sbjct: 260 DEVQTGFGRLGSHFWGFES 278
>U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical
protein T01B11.2a protein.
Length = 467
Score = 129 bits (312), Expect = 2e-30
Identities = 66/155 (42%), Positives = 97/155 (62%), Gaps = 2/155 (1%)
Frame = -1
Query: 630 GVKPDIVTMAKGIGNGFPLAAVVTTKEIA-ANHAKAAYFNTFGGNPMASTVGKAVLEVIE 454
G PDIVTM K +GNGFP++AV T KEIA A + YFNT+GGNP+A +V++V++
Sbjct: 297 GFLPDIVTMGKPMGNGFPVSAVATRKEIADALGGEVGYFNTYGGNPVACAAVISVMKVVK 356
Query: 453 EEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELV-EPGTKTPLTTSKVND 277
+E L ++S+ +GE L DLQK+H IGD+RG GL G++LV + T+ P +
Sbjct: 357 DENLLEHSQQMGEKLEVALRDLQKKHECIGDIRGVGLFWGIDLVKDRNTREPDQKLAIAT 416
Query: 276 IHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDV 172
I K G+L+ G N+ +IKPP+C + ++
Sbjct: 417 ILALRKSYGILLNADGPHTNILKIKPPLCFNENNI 451
>U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical
protein C16A3.10a protein.
Length = 422
Score = 85.0 bits (201), Expect = 5e-17
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 1/160 (0%)
Frame = -1
Query: 627 VKPDIVTMAKGIGNGF-PLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEE 451
V+PDIV + K + GF P++AV+ + N + +T+GGNP+A V A LE+++E
Sbjct: 264 VRPDIVVLGKALSGGFYPVSAVLCDDNVMMNIKPGEHGSTYGGNPLACKVAIAALEILQE 323
Query: 450 EGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIH 271
E L +NS V+G+ + +L L K ++ VRG+GL + + + +
Sbjct: 324 EKLVENSAVMGDLLMSKLKTLPKD--IVSTVRGKGLFCAIVINKKYDAWKVCL------- 374
Query: 270 ENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISII 151
+K+NG+L ++ R PP+CI K+ V+ II
Sbjct: 375 -KLKENGLLAK--NTHGDIIRFAPPLCINKEQVEQAADII 411
>U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical
protein C16A3.10b protein.
Length = 357
Score = 85.0 bits (201), Expect = 5e-17
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 1/160 (0%)
Frame = -1
Query: 627 VKPDIVTMAKGIGNGF-PLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEE 451
V+PDIV + K + GF P++AV+ + N + +T+GGNP+A V A LE+++E
Sbjct: 199 VRPDIVVLGKALSGGFYPVSAVLCDDNVMMNIKPGEHGSTYGGNPLACKVAIAALEILQE 258
Query: 450 EGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIH 271
E L +NS V+G+ + +L L K ++ VRG+GL + + + +
Sbjct: 259 EKLVENSAVMGDLLMSKLKTLPKD--IVSTVRGKGLFCAIVINKKYDAWKVCL------- 309
Query: 270 ENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISII 151
+K+NG+L ++ R PP+CI K+ V+ II
Sbjct: 310 -KLKENGLLAK--NTHGDIIRFAPPLCINKEQVEQAADII 346
>Z69664-4|CAA93517.1| 483|Caenorhabditis elegans Hypothetical
protein K04D7.3 protein.
Length = 483
Score = 41.1 bits (92), Expect = 7e-04
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 1/163 (0%)
Frame = -1
Query: 621 PDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGL 442
PD+VT +K + G + + A Y NT+ G+P + + +EVI+ +GL
Sbjct: 334 PDMVTFSKKLLTG----GYFYGEHLRVKEAYRIY-NTWMGDPTKLLLLEKAVEVIKRDGL 388
Query: 441 QQNSKVVGEYFIRQLMDLQ-KQHPVIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHEN 265
+ S+ VG F ++L +LQ + RG+G V+ + ++
Sbjct: 389 IEQSREVGAEFQKRLGELQASSGGKLDQARGRGTFAAVDFPSGSLRDKFVDLAIS----- 443
Query: 264 IKDNGVLIARGGRFNNVFRIKPPMCITKQDVDFGISIINDAIK 136
NG + GG + R +P + TK+ +D +++ +K
Sbjct: 444 ---NG--LHCGGCGDRSLRFRPSLVYTKKHLDLTFDLLDKTLK 481
>Z93374-5|CAB07557.1| 935|Caenorhabditis elegans Hypothetical
protein C06C6.7 protein.
Length = 935
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +1
Query: 121 LVDNFFDRIIDDRNAEVDVL-FSDAHWRFYSEYIIKASTTSDEHSVVFDILMDIINFGSG 297
L+D+F D I+ N+ DVL F+ + ++ I +T D SV+ D+++ + F
Sbjct: 261 LIDSFVD-IMLLHNSHFDVLLFTSPSFNAHTVQYIPFATDPDI-SVMKDVVVSL--FSCI 316
Query: 298 QRCLSSGFNKLHSDHEALSPDIANHWV 378
R +++GF SD E LS D + W+
Sbjct: 317 NRTVTAGFANGISDIEKLSSDSKDRWI 343
>AL023834-2|CAA19479.2| 217|Caenorhabditis elegans Hypothetical
protein Y32B12A.3 protein.
Length = 217
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 85 KTFKRARISITHLVDNFFDRIIDDRNAEVDVLFSDAHWRFYSEYIIKASTTSDEHSVVF 261
KTFK+ R ++N I D ++ D F DA YS+Y + T + V+F
Sbjct: 105 KTFKKIRAIEGPALENLDKLIADGQSGSFDFAFIDADKTNYSKYYDRCVTLLRKGGVIF 163
>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Frame = +1
Query: 388 KIHQLPDEVFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKV---GSLRVIGCYLFS 558
++H + LL+ +Q H+ +E V G+ + +L S
Sbjct: 477 QVHSYKLPTVCQHCKKLLKGLIRQGMQCRDCKYNCHKKCSEHVAKDCSGNTKASQFFLGS 536
Query: 559 GDDSGQRESVADPLSHRHDVGLHARASRSPRNDLQ 663
D G E D LS R G H +A +P LQ
Sbjct: 537 QADDGASEDRDDDLSLRSGSGAHKKAQNTPSAPLQ 571
>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Frame = +1
Query: 388 KIHQLPDEVFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKV---GSLRVIGCYLFS 558
++H + LL+ +Q H+ +E V G+ + +L S
Sbjct: 477 QVHSYKLPTVCQHCKKLLKGLIRQGMQCRDCKYNCHKKCSEHVAKDCSGNTKASQFFLGS 536
Query: 559 GDDSGQRESVADPLSHRHDVGLHARASRSPRNDLQ 663
D G E D LS R G H +A +P LQ
Sbjct: 537 QADDGASEDRDDDLSLRSGSGAHKKAQNTPSAPLQ 571
>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Frame = +1
Query: 388 KIHQLPDEVFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKV---GSLRVIGCYLFS 558
++H + LL+ +Q H+ +E V G+ + +L S
Sbjct: 477 QVHSYKLPTVCQHCKKLLKGLIRQGMQCRDCKYNCHKKCSEHVAKDCSGNTKASQFFLGS 536
Query: 559 GDDSGQRESVADPLSHRHDVGLHARASRSPRNDLQ 663
D G E D LS R G H +A +P LQ
Sbjct: 537 QADDGASEDRDDDLSLRSGSGAHKKAQNTPSAPLQ 571
>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
protein T25E12.4a protein.
Length = 1101
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Frame = +1
Query: 388 KIHQLPDEVFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKV---GSLRVIGCYLFS 558
++H + LL+ +Q H+ +E V G+ + +L S
Sbjct: 477 QVHSYKLPTVCQHCKKLLKGLIRQGMQCRDCKYNCHKKCSEHVAKDCSGNTKASQFFLGS 536
Query: 559 GDDSGQRESVADPLSHRHDVGLHARASRSPRNDLQ 663
D G E D LS R G H +A +P LQ
Sbjct: 537 QADDGASEDRDDDLSLRSGSGAHKKAQNTPSAPLQ 571
>Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical
protein C50H2.1 protein.
Length = 929
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 412 VFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKVGSLRVIGCYLFS 558
VFA L ++ S F + S++ +S R S KVG L +IG +LF+
Sbjct: 518 VFASELGII--SMFLIAFEMSYNTRQSFRGRRLSPKVGVLLMIGGWLFA 564
>U39653-4|AAL56624.1| 649|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform b protein.
Length = 649
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 322 NKLHSDHEALSPDIANHWVLLLKIHQLPDE-VFADYLTVLLQ 444
N LHS+H+ L P + + +H+LP + +F TV L+
Sbjct: 340 NLLHSEHKQLQPFLNKLHTSSVPLHRLPRQTIFVQNSTVRLE 381
>AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich
repeat-containingG protein-coupled receptor protein.
Length = 929
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 412 VFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKVGSLRVIGCYLFS 558
VFA L ++ S F + S++ +S R S KVG L +IG +LF+
Sbjct: 518 VFASELGII--SMFLIAFEMSYNTRQSFRGRRLSPKVGVLLMIGGWLFA 564
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,433,280
Number of Sequences: 27780
Number of extensions: 334928
Number of successful extensions: 1108
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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