Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c19
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   1.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   1.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    24   1.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.8  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.4  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.4  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.4  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 30  YIFPKYSNNLKQCILYKNKNFQTGKDFYY 116
           Y F KY    K+   +  KN  T  D+YY
Sbjct: 148 YEFSKYDKLKKKLEEWTGKNITTPWDYYY 176


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 30  YIFPKYSNNLKQCILYKNKNFQTGKDFYY 116
           Y F KY    K+   +  KN  T  D+YY
Sbjct: 163 YEFSKYDKLKKKLEEWTGKNITTPWDYYY 191


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 30  YIFPKYSNNLKQCILYKNKNFQTGKDFYY 116
           Y F KY    K+   +  KN  T  D+YY
Sbjct: 51  YEFSKYDKLKKKLEEWTGKNITTPWDYYY 79


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 45  YSNNLKQCILYKNKNFQTGKDFYYTLS 125
           Y+NN      Y N N+   K  YY ++
Sbjct: 96  YNNNNYNNYNYNNNNYNNYKKLYYNIN 122


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 468 LEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQGL 343
           L + ++  +QQ      +Y ++Q + LQ  +P  G   G+GL
Sbjct: 179 LALQQQRLIQQLQITQSQYLLQQGLGLQGHNPSSGLQPGEGL 220


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 208 SEYIIKASTTSDEHSVVFDILMDIINFGSGQRCLSSGFNKLHSDHEAL 351
           + +I  AS T  E++V   +  D+I+   G R ++        D+E +
Sbjct: 424 ARHIPHASVTDSENTVPRYLSPDVISALKGVRFIAQHIKNADKDNEVI 471


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 9   LVLYFSNYIFPKYSNNLKQCILYKNKNFQTGKDFY 113
           L++++ + +F     N ++C  Y+N N   G+ +Y
Sbjct: 23  LLIFYGSIMFSMTQVNKEECDYYQNLNL--GEIYY 55


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 348 GLMIGVELVEPGTKTPLTTSKVNDIHENIK 259
           G  + VE +E GT+         D+HE I+
Sbjct: 68  GNTLNVEKLESGTRELTPDDFTEDVHEIIE 97


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 348 GLMIGVELVEPGTKTPLTTSKVNDIHENIK 259
           G  + VE +E GT+         D+HE I+
Sbjct: 68  GNTLNVEKLESGTRELTPDDFTEDVHEIIE 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,291
Number of Sequences: 438
Number of extensions: 3804
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)