Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11c17
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 38 0.001
SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 34 0.021
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 31 0.19
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 29 0.78
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 28 1.4
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 27 1.8
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 27 2.4
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 27 2.4
SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 27 3.1
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 27 3.1
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 26 4.2
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 5.5
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 5.5
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 26 5.5
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 5.5
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 26 5.5
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 25 7.3
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp... 25 7.3
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 9.6
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.6
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Frame = -2
Query: 541 KKLQHLTIATLATQ--EKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQECKR 368
+K++ LTIA+LATQ + Y + + L I + ++E II+ I A ++ G++ Q K
Sbjct: 281 RKMKLLTIASLATQAPNNTLSYGDVAKSLKI-DENEVELWIIDVIRAGLVEGRMSQLTKT 339
Query: 367 VEVDVALGRDARLEDAASIADVLADWCNACEAVLNSVDQ 251
+ + + R + ++ + LA W ++ +L ++Q
Sbjct: 340 LSIHRSSYRVFGKHEWVALHEKLAKWGSSLRYMLQVMEQ 378
>SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -2
Query: 340 DARLEDAASIADVLADWCNACEAVLNSVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTL 161
D+ LED S +++ C+ +VL + ++ + QKA+ Q +E+K+ + K
Sbjct: 76 DSELEDPVSSNELIQTSCHLLTSVLTQLQTNLDKLKDSHQKALLRIQELEKKVSELSKNN 135
Query: 160 K 158
K
Sbjct: 136 K 136
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 283 HCTSRPGHQQWKLHLQAAHLCQGPRPLPH 369
H ++P H+ WK H + H + PRP+PH
Sbjct: 271 HNGTKPDHKPWK-HEEHCHHGKFPRPIPH 298
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 0.78
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -2
Query: 643 YATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCI-PYSVLLE 467
YA + YK Y+E +SDY EL K+L + + + CI S L+
Sbjct: 161 YAKSAHSTKTVVDALYKSYLEKQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLIT 220
Query: 466 ELD 458
L+
Sbjct: 221 SLE 223
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -2
Query: 244 QRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSAPKKNSSKSKTAR 65
+ A + ++ ++HQ+GI L + K + Q +A+ A A KK +S+S+
Sbjct: 66 EHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKKAASESEKKA 125
Query: 64 NSAK 53
AK
Sbjct: 126 IKAK 129
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 307 DVLADWCNACEAVLNSVDQHIQRANHQK 224
DV +DW +AC+AV N + + N Q+
Sbjct: 68 DVYSDWIDACDAVANQA-KEVDNINDQE 94
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 142 DESASGANAEPHSAPKKNSSKSKTARNSAKFWQKST*LKNRLN 14
D + +A P+S KKN +K +NS F ++ T K + N
Sbjct: 723 DVTGQSNHALPNSVTKKNGTKQPYTKNSLPFNERITRSKAKKN 765
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 2.4
Identities = 38/145 (26%), Positives = 58/145 (40%)
Frame = -2
Query: 502 QEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLED 323
Q+ Y + E LD KNV D D IEA LD+E +R+E + D +ED
Sbjct: 423 QDPSWKYDRMPELLDGKNVADFVDPEIEAKLL-----ALDEEEERLEREGYYDSDQEIED 477
Query: 322 AASIADVLADWCNACEAVLNSVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTLKTQAEN 143
A E VL + I+ N A R ++ + +L ++T E
Sbjct: 478 ADE------------EEVLEKASR-IREKNKLTMLAARQKKIKNRPVLPRTAGIRTLDEL 524
Query: 142 DESASGANAEPHSAPKKNSSKSKTA 68
S A S ++ S+++TA
Sbjct: 525 QSSLQSAGLPSDSIEERARSRARTA 549
>SPAC144.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 112
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = -2
Query: 229 QKQKAIRHQQGIEQK-----ILYIKKTLKTQAENDESASGANAEPHSAPKKNSSKSK 74
+ +K ++ QQ +++K I+Y+KKT++ ++ N + + +K K K
Sbjct: 41 EPKKLVQQQQRLKEKKKNENIIYLKKTMRVTPSEEKIHEMINQKRETKKRKRKQKKK 97
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = -2
Query: 559 LTTVQCKKLQHLTIATLATQEKCIP---YSVLLEELD 458
+ ++ CK+LQ L + Q KCI Y V+L++++
Sbjct: 1 MPSIDCKRLQKLAPKSPENQSKCISRLRYMVMLDQVE 37
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -2
Query: 244 QRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSAPKKNSSKSKTAR 65
+ A + ++ ++HQ+GI L + K + Q +A+ A A K+ +S+S+
Sbjct: 66 EHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKRAASESEKKA 125
Query: 64 NSAK 53
AK
Sbjct: 126 IKAK 129
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 26.2 bits (55), Expect = 4.2
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -2
Query: 646 PYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATL---ATQEKCIPYSV 476
P + ++T NLF K Y ++ DYL + + K + T + L +EK IP
Sbjct: 393 PSKSTIRTKNLFNVSDCKLYWQSNGDYLCVKVDRHTKTKKSTFSNLEIFRIREKNIP--- 449
Query: 475 LLEELDIKNV 446
+E +D+K+V
Sbjct: 450 -VEVVDLKDV 458
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -2
Query: 265 NSVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSAPKKNS 86
N V QR K+ A +H+Q E + +I KT+ T E+ AS P P +S
Sbjct: 200 NYVHLEEQRRLRLKRNAAKHRQLREPILKFISKTIST--EDGREASNYYVAPLEHPLCHS 257
Query: 85 S 83
+
Sbjct: 258 A 258
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 565 LELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 428
LE V+ KL+H T+ QE C + ++L+ + + L+ L
Sbjct: 295 LEECLVELDKLEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQL 340
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 5.5
Identities = 28/136 (20%), Positives = 58/136 (42%)
Frame = -2
Query: 460 DIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLEDAASIADVLADWCNA 281
D+ N DL D++ + + + DQ + + D A + L+ + A++ N
Sbjct: 118 DLANAMDLFDIVDKNSASANRSKQADQRQLKTKADYAAFQADILKKVKN-CQTTAEYNNF 176
Query: 280 CEAVLNSVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSA 101
+ ++ + + N KA+ Q+ + + ++ ++ KTQ++ +A A +A
Sbjct: 177 VQDLIPLL---LTGLNATNLKAV--QKSVNKLVVNKEQQEKTQSKRGAAAPAAKPVSTAA 231
Query: 100 PKKNSSKSKTARNSAK 53
P K K NS K
Sbjct: 232 PSKKGGKPTVNVNSKK 247
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 202 QGIEQKILYIKKTLKTQAENDESASGANAEP-HSAPKKNSSKSKTARNSAKF 50
QG+ ++KK T ++ S S ++ E +SA SKSK A+N+ F
Sbjct: 575 QGVSDAKSFVKKIKSTYIDDSSSNSPSDIESNYSADDNEISKSK-AQNAIDF 625
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -2
Query: 328 EDAASIADVLADWCNACEAVLNSVDQ 251
+D + D A WC C+A+ +Q
Sbjct: 17 QDKLVVVDFFATWCGPCKAIAPKFEQ 42
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/70 (15%), Positives = 32/70 (45%)
Frame = -2
Query: 244 QRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSAPKKNSSKSKTAR 65
+ ++QK +++ + I +++ + + + EN+++ + E S N ++ + +
Sbjct: 16 EEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQNTSVESESEELDNENEDERVQ 75
Query: 64 NSAKFWQKST 35
S ST
Sbjct: 76 KSVNLNASST 85
>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 511 LATQEKCIPYSVLLEELDIKNVRDLEDLI 425
+ QEK PY + +ELD+ V D E+++
Sbjct: 106 IRNQEKKDPYYYIRKELDVLKVLDHENVV 134
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -2
Query: 490 IPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLEDAASI 311
+P+S + + I +E ++E I A ++GK+D KRV ++ + ED +I
Sbjct: 322 LPFSKIAVDFHIDE-NFIEKNLLEIIEAKKLNGKVDSLQKRVYIEPS-SEPENFEDIKNI 379
Query: 310 A 308
A
Sbjct: 380 A 380
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 9.6
Identities = 19/84 (22%), Positives = 33/84 (39%)
Frame = -2
Query: 286 NACEAVLNSVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPH 107
N A + QH Q K A+ HQ+ E +K T AEN+ +
Sbjct: 179 NPVAAPSTATTQHTQLP---KTSAVSHQKPHEAPSTAVKAPTATVAENEPYPKPQSVPTT 235
Query: 106 SAPKKNSSKSKTARNSAKFWQKST 35
++P ++ ++ N ++ST
Sbjct: 236 TSPNNENNALRSTANVINNTRQST 259
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 329 KPRISAKGHVHFHTFTFL 382
K +S K HVHFH F+
Sbjct: 138 KSLLSIKSHVHFHLIPFI 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,959
Number of Sequences: 5004
Number of extensions: 44054
Number of successful extensions: 176
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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