Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c08
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   3.4  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   4.5  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      25   4.5  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   4.5  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    25   5.9  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   5.9  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   7.8  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.8  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   7.8  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = -1

Query: 466 TQLQEALKDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIFN---ND 299
           +Q    LK   T  T   S+ ST  D++ LP+  ++++TN K    N+N++ + +   N 
Sbjct: 780 SQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNA 838

Query: 298 AQITRLLK 275
             + +L+K
Sbjct: 839 NSVNKLMK 846


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 152 LTYSCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTYRKAFSF 277
           +T     K + +G   ++  +F+ D N+ F+N+ TY    SF
Sbjct: 190 MTIKMLEKRFKKG-EYTTLESFVKDLNQMFINAKTYNAPGSF 230


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 438 LRRWKRLSKACIAPKSICIFPNSKLKRRRISKMF 337
           LRR++R+S A   PK+     NS ++ R+   MF
Sbjct: 27  LRRFRRISNASTIPKN--YLNNSTVENRKYKTMF 58


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 331 NMNVNKIFNNDAQITRLLKGESLSVS 254
           +++ NKI N    +TR LKG +LS++
Sbjct: 847 SVSENKILNRSFSLTRSLKGLALSLA 872


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 423 RLSKACIAPKSICIFPNSKLKRRRISKMF 337
           RLS  C   K    F     KR+R+SK F
Sbjct: 352 RLSDVCFEEKVYTDFSKKGSKRKRVSKKF 380


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/42 (23%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 152 LTYSCTHKYYGEGVSCSSFSAFLVDFNERFLNS-LTYRKAFS 274
           + Y+C +K+Y    + +  S++L++    FL++ L + ++F+
Sbjct: 26  INYTCDNKFYSSPSTFALLSSYLIEKRLNFLHAFLPHCRSFA 67


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 143 YKRLTYSCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTY 259
           Y   T + TH+  G  +  S F+A    +  RFLNS  Y
Sbjct: 175 YTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQY 213


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 143 YKRLTYSCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTY 259
           Y   T + TH+  G  +  S F+A    +  RFLNS  Y
Sbjct: 175 YTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQY 213


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 481 YKDGITQLQEALKDPKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLS 332
           +K+ +  L+E + + + L      +    +DL+L   ++ET  N K VL+
Sbjct: 376 WKEAVN-LEEEVDNARILLARAVELIPMSIDLWLALARLETYENAKKVLN 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,749
Number of Sequences: 5004
Number of extensions: 29287
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)