Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11c08
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 44 5e-05
11_02_0012 - 7346282-7347136,7347234-7347593 39 0.002
11_01_0750 - 6315126-6315896,6316371-6316784 34 0.069
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 33 0.12
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 28 4.5
07_01_0843 - 6851354-6851518,6851654-6852448 27 7.9
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 44.4 bits (100), Expect = 5e-05
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Frame = -1
Query: 478 KDGITQLQEALK-DPKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNN 302
+DG+ L E L +P+ LE + T LPKFKI D+L ++ ++ F++
Sbjct: 323 QDGLWSLAEKLNSEPEFLEKHIPTRQVTVGQFKLPKFKISFGFEASDLLKSLGLHLPFSS 382
Query: 301 DAQITRLL---KGESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXXXXXXXXSQPLVFKAN 131
+A +T ++ +G++L VS K ++ F A+
Sbjct: 383 EADLTEMVDSPEGKNLFVSSVFHKSFVEVNEEGTEAAAATAAVITLRSAPIAED--FVAD 440
Query: 130 HPFVFFLKGD--GVTLFNG 80
HPF+F ++ D GV LF G
Sbjct: 441 HPFLFLIQEDMTGVVLFVG 459
Score = 30.7 bits (66), Expect = 0.64
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 7/140 (5%)
Frame = -1
Query: 478 KDGITQLQEALK-DPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIFN 305
+DG+ L E L +P+ +E M V + LPKFKI +L + + +F
Sbjct: 575 QDGLWSLAEKLNSEPEFMEN-HIPMRPVHVGQFKLPKFKISFGFGASGLLKGLGLPLLFG 633
Query: 304 NDAQITRLLKG---ESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXXXXXXXXSQPLVFKA 134
++ + ++ ++L VS K + L F A
Sbjct: 634 SEVDLIEMVDSPGAQNLFVSSVFHKSFIEVNEEGTEATAAVMVSMEHSRP---RRLNFVA 690
Query: 133 NHPFVFFLKGD--GVTLFNG 80
+HPF+F ++ D GV LF G
Sbjct: 691 DHPFMFLIREDVTGVILFIG 710
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Frame = -1
Query: 391 DLYLPKFKIETETNLKDVLSNMNVNKIFN-NDAQITRLLKGESLSVSEAIQKXXXXXXXX 215
DL +P+FK+ + + +VL M + F+ ++ ++ GE + V + + +
Sbjct: 289 DLRVPRFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGMIDGELVVVEKVMHRAVVEVNEE 348
Query: 214 XXXXXXXXXXXXXXXXXXXSQPLVFKANHPFVFFL---KGDGVTLFNGVFHP 68
+ P+ F A+HPF FF+ K D V V P
Sbjct: 349 GTEAAAATACTMKFLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHVLDP 400
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 33.9 bits (74), Expect = 0.069
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Frame = -1
Query: 475 DGITQL-QEALKDPKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNND 299
DG+ +L Q+ +P LE + V + +P FKI + ++KD L +M + F +
Sbjct: 253 DGLFELTQKIFSEPMFLEQHLPTE-KCHVGISVPNFKISFQIDVKDFLKDMGLELPFLRE 311
Query: 298 AQITRLLKGESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXXXXXXXXSQPLVFKANHPFV 119
A+ + ++K E S FKA+HPF
Sbjct: 312 AEFSDMIK-EDDSSGPLFLSDVLHKAVLEVDQKGIEETSVSMGLGKPLPAQHFKADHPFF 370
Query: 118 FFLKGD--GVTLFNG 80
F ++ + G +F G
Sbjct: 371 FMIREEVSGTVIFMG 385
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 33.1 bits (72), Expect = 0.12
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 6/139 (4%)
Frame = -1
Query: 478 KDGITQLQEALK-DPKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNN 302
+DG+ L L +P+ LE + T LPKFKI D+L + + F++
Sbjct: 115 QDGLWSLAAKLNSEPEFLEKRIPTRQVTVGKFKLPKFKISFGFEASDLLKILGLQLPFSS 174
Query: 301 DAQITRLL---KGESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXXXXXXXXSQPLVFKAN 131
A +T ++ + +L VS K + F A+
Sbjct: 175 KADLTGMVGSPERHNLFVSSLFHKSFVQVDEEGTEAAAASAAVVSFRSAPV--TVDFVAD 232
Query: 130 HPFVFFLKGD--GVTLFNG 80
HPF+F ++ D GV LF G
Sbjct: 233 HPFLFLIREDMTGVVLFIG 251
>07_01_0464 -
3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 436 KTLETAQQSMYSTEVDLYLP-KFKIETETNL 347
K +E A Q +YSTEV+L+ F +ET+T L
Sbjct: 809 KGMEEADQKIYSTEVNLHSQYYFYMETQTAL 839
>07_01_0843 - 6851354-6851518,6851654-6852448
Length = 319
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -1
Query: 445 KDPKTLETAQQSMYSTEVDLYLPKFKIE-TETNLKDVLSNMNVNKIFNNDAQITRLLKGE 269
+DPK L + + Y +V LPK K E +D S N + + +L GE
Sbjct: 83 EDPKVLWDSLKDRYGHQVKALLPKAKREWLHLRFQDYKSMEQYNSVLHRIVTCLKLC-GE 141
Query: 268 SLSVSEAIQK 239
++ ++ I K
Sbjct: 142 KITDADMIDK 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,050
Number of Sequences: 37544
Number of extensions: 162006
Number of successful extensions: 346
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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