Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c07
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0470 + 3645010-3647686,3647804-3648168                           29   3.2  
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684...    28   5.6  
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629...    28   5.6  

>11_01_0470 + 3645010-3647686,3647804-3648168
          Length = 1013

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
 Frame = +2

Query: 464 YLH*YTFVFLLPQTLQNQVYSLTCICEDPTAAW---NQLLYQ-ENYRIHKLQCLSTYSN- 628
           YLH   F++L   TLQ  +  LT  C +  A W   N L+ Q  N     LQ L  Y+N 
Sbjct: 120 YLHRLQFLYLSNNTLQGMIPDLT-NCSNLKAIWLDSNDLVGQIPNILPPHLQQLQLYNNN 178

Query: 629 ----ISVYLSNI 652
               I  YL+NI
Sbjct: 179 LTGTIPSYLANI 190


>02_05_0854 -
           32267047-32267298,32267383-32268194,32268289-32268421,
           32268530-32268619
          Length = 428

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 584 FLGITVDSKLQWGPH-ICK 531
           F G T DS+L WGPH IC+
Sbjct: 132 FEGGTPDSRLDWGPHMICR 150


>02_05_0853 +
           32261705-32261794,32261895-32262027,32262117-32262928,
           32263020-32263271
          Length = 428

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 584 FLGITVDSKLQWGPH-ICK 531
           F G T DS+L WGPH IC+
Sbjct: 132 FEGGTPDSRLDWGPHMICR 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,860,424
Number of Sequences: 37544
Number of extensions: 308221
Number of successful extensions: 626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)