Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c07
         (652 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068496-1|AAH68496.1|  854|Homo sapiens MGC16169 protein protein.     30   6.2  
BC020853-1|AAH20853.2|  286|Homo sapiens MGC16169 protein protein.     30   6.2  
BC009208-1|AAH09208.2|  830|Homo sapiens hypothetical protein MG...    30   6.2  
AK098157-1|BAC05244.1|  636|Homo sapiens protein ( Homo sapiens ...    30   6.2  
AK074305-1|BAB85045.1|  893|Homo sapiens protein ( Homo sapiens ...    30   6.2  

>BC068496-1|AAH68496.1|  854|Homo sapiens MGC16169 protein protein.
          Length = 854

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -3

Query: 608 TGACGFDSFLGITVDSKLQWGPHICKLANRLGSAAFAVKEIRTYTNEDTAHLVYFSY 438
           +G+         T + +L  GP+   L N  G     V  +  +T E  AHLV   Y
Sbjct: 772 SGSINIPFSAAFTAEGELTQGPYTAMLQNFKGKVIVIVGHVAKHTAEFAAHLVKMKY 828


>BC020853-1|AAH20853.2|  286|Homo sapiens MGC16169 protein protein.
          Length = 286

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -3

Query: 608 TGACGFDSFLGITVDSKLQWGPHICKLANRLGSAAFAVKEIRTYTNEDTAHLVYFSY 438
           +G+         T + +L  GP+   L N  G     V  +  +T E  AHLV   Y
Sbjct: 204 SGSINIPFSAAFTAEGELTQGPYTAMLQNFKGKVIVIVGHVAKHTAEFAAHLVKMKY 260


>BC009208-1|AAH09208.2|  830|Homo sapiens hypothetical protein
           MGC16169 protein.
          Length = 830

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -3

Query: 608 TGACGFDSFLGITVDSKLQWGPHICKLANRLGSAAFAVKEIRTYTNEDTAHLVYFSY 438
           +G+         T + +L  GP+   L N  G     V  +  +T E  AHLV   Y
Sbjct: 748 SGSINIPFSAAFTAEGELTQGPYTAMLQNFKGKVIVIVGHVAKHTAEFAAHLVKMKY 804


>AK098157-1|BAC05244.1|  636|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40838 fis, clone TRACH2013552. ).
          Length = 636

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -3

Query: 608 TGACGFDSFLGITVDSKLQWGPHICKLANRLGSAAFAVKEIRTYTNEDTAHLVYFSY 438
           +G+         T + +L  GP+   L N  G     V  +  +T E  AHLV   Y
Sbjct: 554 SGSINIPFSAAFTAEGELTQGPYTAMLQNFKGKVIVIVGHVAKHTAEFAAHLVKMKY 610


>AK074305-1|BAB85045.1|  893|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23725 fis, clone HEP14024. ).
          Length = 893

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = -3

Query: 608 TGACGFDSFLGITVDSKLQWGPHICKLANRLGSAAFAVKEIRTYTNEDTAHLVYFSY 438
           +G+         T + +L  GP+   L N  G     V  +  +T E  AHLV   Y
Sbjct: 811 SGSINIPFSAAFTAEGELTQGPYTAMLQNFKGKVIVIVGHVAKHTAEFAAHLVKMKY 867


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,424,803
Number of Sequences: 237096
Number of extensions: 1856314
Number of successful extensions: 3328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3328
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)