Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11c07
(652 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L13255-1|AAC37184.1| 359|Drosophila melanogaster lachesin protein. 30 2.4
BT003177-1|AAO24932.1| 252|Drosophila melanogaster RH65858p pro... 30 2.4
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 30 2.4
AY051829-1|AAK93253.1| 359|Drosophila melanogaster LD33460p pro... 30 2.4
AE013599-1499|AAM68689.1| 252|Drosophila melanogaster CG12369-P... 30 2.4
AE013599-1498|AAF58506.1| 359|Drosophila melanogaster CG12369-P... 30 2.4
BT001826-1|AAN71581.1| 92|Drosophila melanogaster RH44003p pro... 30 3.1
AE014298-2220|AAO41659.1| 1812|Drosophila melanogaster CG33173-P... 29 5.5
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 29 7.2
BT014917-1|AAT47768.1| 1870|Drosophila melanogaster RE25258p pro... 29 7.2
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 29 7.2
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 29 7.2
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 29 7.2
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 29 7.2
AE013599-675|AAF59067.2| 1711|Drosophila melanogaster CG8639-PA ... 29 7.2
>L13255-1|AAC37184.1| 359|Drosophila melanogaster lachesin protein.
Length = 359
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 590 DSFLGITVDSKLQWGPHICKLANRLGSAAFAVKEIRT 480
DS L + K Q+G ++CK NR G A V T
Sbjct: 285 DSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLFET 321
>BT003177-1|AAO24932.1| 252|Drosophila melanogaster RH65858p
protein.
Length = 252
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 590 DSFLGITVDSKLQWGPHICKLANRLGSAAFAVKEIRT 480
DS L + K Q+G ++CK NR G A V T
Sbjct: 178 DSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLFET 214
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 30.3 bits (65), Expect = 2.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 587 SFLGITVDSKLQWGPHICKLANRLGSA 507
S+LG+T+DSKL H+ KL + +A
Sbjct: 810 SYLGVTLDSKLTLSSHVTKLLGKYSTA 836
>AY051829-1|AAK93253.1| 359|Drosophila melanogaster LD33460p
protein.
Length = 359
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 590 DSFLGITVDSKLQWGPHICKLANRLGSAAFAVKEIRT 480
DS L + K Q+G ++CK NR G A V T
Sbjct: 285 DSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLFET 321
>AE013599-1499|AAM68689.1| 252|Drosophila melanogaster CG12369-PB,
isoform B protein.
Length = 252
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 590 DSFLGITVDSKLQWGPHICKLANRLGSAAFAVKEIRT 480
DS L + K Q+G ++CK NR G A V T
Sbjct: 178 DSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLFET 214
>AE013599-1498|AAF58506.1| 359|Drosophila melanogaster CG12369-PA,
isoform A protein.
Length = 359
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 590 DSFLGITVDSKLQWGPHICKLANRLGSAAFAVKEIRT 480
DS L + K Q+G ++CK NR G A V T
Sbjct: 285 DSTLRVITVEKRQYGDYVCKATNRFGEAEARVNLFET 321
>BT001826-1|AAN71581.1| 92|Drosophila melanogaster RH44003p
protein.
Length = 92
Score = 29.9 bits (64), Expect = 3.1
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -1
Query: 460 HIWFISVIFIGSFPITEHNATH*LPLCCPTAFCYGAMLPISKRVSSCRRGL 308
H+W I + S PI H+ +H +PL A+ + + ++ + G+
Sbjct: 17 HLWHICFHMLLSCPIVSHHCSHNIPLAYAYAYAHSYHSVVCAEITESKGGV 67
>AE014298-2220|AAO41659.1| 1812|Drosophila melanogaster CG33173-PA
protein.
Length = 1812
Score = 29.1 bits (62), Expect = 5.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 530 LANRLGSAAF-AVKEIRTYTNEDTAHLVYFSY 438
LA LG + AVKE+R +TN +TAH + +
Sbjct: 1081 LAYSLGILVYIAVKELRPFTNPNTAHFLLLDF 1112
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 587 SFLGITVDSKLQWGPHICKLANR 519
S+LG+ +DSKL PH+ K+ +
Sbjct: 682 SYLGVILDSKLTLSPHVTKVVGK 704
>BT014917-1|AAT47768.1| 1870|Drosophila melanogaster RE25258p protein.
Length = 1870
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 186 LWFVTNLLPTLIVLIKFFGL*FLDWFISCQ 97
L++ T ++P L+ + G FL W I C+
Sbjct: 1074 LFYATFVIPVLVFFVAAIGYTFLSWIIMCR 1103
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 587 SFLGITVDSKLQWGPHICKLANR 519
S+LG+ +DSKL PH+ K+ +
Sbjct: 798 SYLGVILDSKLTLSPHVTKVVGK 820
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 587 SFLGITVDSKLQWGPHICKLANR 519
S+LG+ +DSKL PH+ K+ +
Sbjct: 798 SYLGVILDSKLTLSPHVTKVVGK 820
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 587 SFLGITVDSKLQWGPHICKLANR 519
S+LG+ +DSKL PH+ K+ +
Sbjct: 760 SYLGVILDSKLTLSPHVTKVVGK 782
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 587 SFLGITVDSKLQWGPHICKLANR 519
S+LG+ +DSKL PH+ K+ +
Sbjct: 798 SYLGVILDSKLTLSPHVTKVVGK 820
>AE013599-675|AAF59067.2| 1711|Drosophila melanogaster CG8639-PA
protein.
Length = 1711
Score = 28.7 bits (61), Expect = 7.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 186 LWFVTNLLPTLIVLIKFFGL*FLDWFISCQ 97
L++ T ++P L+ + G FL W I C+
Sbjct: 915 LFYATFVIPVLVFFVAAIGYTFLSWIIMCR 944
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,501,627
Number of Sequences: 53049
Number of extensions: 558892
Number of successful extensions: 1334
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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