Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c07
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46937-3|CAA87058.2|  457|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AY305839-1|AAR11984.1|  274|Caenorhabditis elegans nuclear recep...    27   8.7  
AF273771-1|AAG15120.1|  454|Caenorhabditis elegans nuclear recep...    27   8.7  

>Z46937-3|CAA87058.2|  457|Caenorhabditis elegans Hypothetical
           protein F43C1.4 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 157 SRQQICDEPQAIANYFNNFSKMYWDAKFRILISLNLSL--KDSLGCILYIARIALFCR 324
           S+  +C+ P   + +F + S +   A FR  +SLN+    K    C+++   + + CR
Sbjct: 17  SKCLVCEHPDGGSAHFGSTSCLACAAFFRRTVSLNIQFQCKKDKNCVIF-HELRMICR 73


>AY305839-1|AAR11984.1|  274|Caenorhabditis elegans nuclear receptor
           NHR-20 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 157 SRQQICDEPQAIANYFNNFSKMYWDAKFRILISLNLSL--KDSLGCILYIARIALFCR 324
           S+  +C+ P   + +F + S +   A FR  +SLN+    K    C+++   + + CR
Sbjct: 17  SKCLVCEHPDGGSAHFGSTSCLACAAFFRRTVSLNIQFQCKKDKNCVIF-HELRMICR 73


>AF273771-1|AAG15120.1|  454|Caenorhabditis elegans nuclear receptor
           NHR-20 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 157 SRQQICDEPQAIANYFNNFSKMYWDAKFRILISLNLSL--KDSLGCILYIARIALFCR 324
           S+  +C+ P   + +F + S +   A FR  +SLN+    K    C+++   + + CR
Sbjct: 14  SKCLVCEHPDGGSAHFGSTSCLACAAFFRRTVSLNIQFQCKKDKNCVIF-HELRMICR 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,733,730
Number of Sequences: 27780
Number of extensions: 312303
Number of successful extensions: 845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)