Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c05
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    44   2e-05
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    29   0.78 
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ...    28   1.4  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   4.2  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    26   4.2  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   4.2  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   7.3  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   7.3  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   9.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.7  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   9.7  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
 Frame = -1

Query: 600 RKESGGLS--AMKK-FQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSG 430
           R+E G +S  A++  F+++D     ++  + L ++HQN I+ +  Y GT  +   F++SG
Sbjct: 309 REEEGPVSFTALRSTFRNMDLKGSSQSISS-LPTVHQNMIATLRPYAGTPGNITAFTSSG 367

Query: 429 LDGQLVIWDL 400
            DG++V+W L
Sbjct: 368 TDGRVVLWTL 377


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 462 KSHTNKFSTSGLDGQLVIWDLDTLERS 382
           K+  NKF+T G D ++ IW L T E S
Sbjct: 28  KNSLNKFATCGGDSKIRIWQLITSESS 54


>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 314

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 522 TFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDLDT 394
           T  D  H + +SC+       + T  F ++G D  + +WDL+T
Sbjct: 141 TITDGGHSDWVSCVRFSPNPDNLT--FVSAGWDKAVKVWDLET 181


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 439 TELVSVRFSSFVNIDARDSVLVYRVQECIAGLDTSMTIQGLELLHSRQSPR 591
           T LVS   +S +++  +D V +  ++ CI     S  IQ LE L  ++  R
Sbjct: 187 TSLVSSNTASKLHLGRKDIVKLSELRNCINSSKDSNQIQELENLLRKEKQR 237


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 444 FSTSGLDGQLVIWDLDTLER 385
           FST+G DG    WD D+ +R
Sbjct: 269 FSTAGSDGTFSFWDKDSHQR 288


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 519 FLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDLDTLERSFE 376
           F D  H+ +I  I+I+       ++ +T GLDG + IW  + + R  E
Sbjct: 12  FDDRGHRLSIFSIHIHPDG----SRIATGGLDGTIRIWSTEAINRENE 55


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 436 STELVSVRFSSFVNIDARDSVLVYRVQECIAGLDTSMTI 552
           STE  S    +F      DSVL+Y + + I GL+T++ I
Sbjct: 45  STEF-SNALHTFGRFSDNDSVLIYDLCKSIIGLETNLGI 82


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 142 IVCSVYLKVLNFYELNSLWIAL 207
           ++ SV   V+NF E+N LW+ +
Sbjct: 126 VLDSVKFLVINFTEMNKLWVRI 147


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 124 KLYL*FIVCSVYLKVLNFYELNSLWIALIYFYARLM 231
           +LY+  I   + L + N   LN+ W AL+ + +  M
Sbjct: 96  RLYMCLISLLIDLSIWNIVPLNARWSALLLYSSSFM 131


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -1

Query: 570 KKFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNK 445
           +   +L + + + + + F  ++  NA+S I +Y+ TK+   K
Sbjct: 382 RSLSALKKSSSLTSENPFQLNVAANAVSTIPVYRTTKTKMKK 423


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -1

Query: 438 TSGLDGQLVIWDLDTLE 388
           ++ ++G++ IWD+DT+E
Sbjct: 246 SADVEGKIKIWDIDTME 262


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/47 (38%), Positives = 28/47 (59%)
 Frame = -3

Query: 259 SGEYIAITVSSV*RKNKSKQSRVNSARKNLKLSNIQNKQ*IIDTTCF 119
           SG +   +VS++ +KN  +Q+  N+A KNL   N Q K+   +TT F
Sbjct: 31  SGIFSKGSVSNLLKKNLDEQAIFNNAFKNL---NPQIKKHFPNTTSF 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,905
Number of Sequences: 5004
Number of extensions: 47497
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)