Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11c05
(660 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08999-1|CAA70203.1| 370|Homo sapiens Sop2p-like protein protein. 81 3e-15
BC054027-1|AAH54027.1| 370|Homo sapiens actin related protein 2... 81 5e-15
BC047889-1|AAH47889.2| 370|Homo sapiens actin related protein 2... 81 5e-15
BC039594-1|AAH39594.2| 370|Homo sapiens actin related protein 2... 81 5e-15
AK223015-1|BAD96735.1| 365|Homo sapiens actin related protein 2... 81 5e-15
AB209059-1|BAD92296.1| 401|Homo sapiens actin related protein 2... 78 2e-14
BC007555-1|AAH07555.1| 372|Homo sapiens actin related protein 2... 65 2e-10
BC002988-1|AAH02988.2| 372|Homo sapiens actin related protein 2... 65 2e-10
BC002562-1|AAH02562.1| 372|Homo sapiens actin related protein 2... 65 2e-10
AF006084-1|AAB64189.1| 372|Homo sapiens p41-Arc protein. 65 2e-10
BC104483-1|AAI04484.1| 495|Homo sapiens SUV420H1 protein protein. 36 0.13
BC103498-1|AAI03499.1| 885|Homo sapiens suppressor of variegati... 36 0.13
BC099714-1|AAH99714.1| 885|Homo sapiens suppressor of variegati... 36 0.13
BC098121-1|AAH98121.1| 471|Homo sapiens SUV420H1 protein protein. 36 0.13
BC012933-1|AAH12933.1| 414|Homo sapiens SUV420H1 protein protein. 36 0.13
AK000046-1|BAA90905.1| 414|Homo sapiens protein ( Homo sapiens ... 36 0.13
AL133230-3|CAI21688.2| 946|Homo sapiens chromosome 20 open read... 30 6.4
>Y08999-1|CAA70203.1| 370|Homo sapiens Sop2p-like protein protein.
Length = 370
Score = 81.0 bits (191), Expect = 3e-15
Identities = 36/97 (37%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Frame = -1
Query: 660 LLYCHDGDD-IXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISC 484
+L+ +D + +V+KLD ++ +SAM++F+++D+ A E +T L+++HQN+I+
Sbjct: 270 MLFIYDDRGCLTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQ 329
Query: 483 INIYKGTKSHTNKFSTSGLDGQLVIWDLDTLERSFEG 373
++IY+ K KF T+G+DG + IWD TLE S +G
Sbjct: 330 VSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQG 366
>BC054027-1|AAH54027.1| 370|Homo sapiens actin related protein 2/3
complex, subunit 1A, 41kDa protein.
Length = 370
Score = 80.6 bits (190), Expect = 5e-15
Identities = 34/87 (39%), Positives = 59/87 (67%)
Frame = -1
Query: 633 IXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSH 454
+ +V+KLD ++ +SAM++F+++D+ A E +T L+++HQN+I+ ++IY+ K
Sbjct: 280 LTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQD 339
Query: 453 TNKFSTSGLDGQLVIWDLDTLERSFEG 373
KF T+G+DG + IWD TLE S +G
Sbjct: 340 CRKFCTTGIDGAMTIWDFKTLESSIQG 366
>BC047889-1|AAH47889.2| 370|Homo sapiens actin related protein 2/3
complex, subunit 1A, 41kDa protein.
Length = 370
Score = 80.6 bits (190), Expect = 5e-15
Identities = 34/87 (39%), Positives = 59/87 (67%)
Frame = -1
Query: 633 IXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSH 454
+ +V+KLD ++ +SAM++F+++D+ A E +T L+++HQN+I+ ++IY+ K
Sbjct: 280 LTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQD 339
Query: 453 TNKFSTSGLDGQLVIWDLDTLERSFEG 373
KF T+G+DG + IWD TLE S +G
Sbjct: 340 CRKFCTTGIDGAMTIWDFKTLESSIQG 366
>BC039594-1|AAH39594.2| 370|Homo sapiens actin related protein 2/3
complex, subunit 1A, 41kDa protein.
Length = 370
Score = 80.6 bits (190), Expect = 5e-15
Identities = 34/87 (39%), Positives = 59/87 (67%)
Frame = -1
Query: 633 IXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSH 454
+ +V+KLD ++ +SAM++F+++D+ A E +T L+++HQN+I+ ++IY+ K
Sbjct: 280 LTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQD 339
Query: 453 TNKFSTSGLDGQLVIWDLDTLERSFEG 373
KF T+G+DG + IWD TLE S +G
Sbjct: 340 CRKFCTTGIDGAMTIWDFKTLESSIQG 366
>AK223015-1|BAD96735.1| 365|Homo sapiens actin related protein 2/3
complex subunit 1A variant protein.
Length = 365
Score = 80.6 bits (190), Expect = 5e-15
Identities = 34/87 (39%), Positives = 59/87 (67%)
Frame = -1
Query: 633 IXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSH 454
+ +V+KLD ++ +SAM++F+++D+ A E +T L+++HQN+I+ ++IY+ K
Sbjct: 275 LTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQD 334
Query: 453 TNKFSTSGLDGQLVIWDLDTLERSFEG 373
KF T+G+DG + IWD TLE S +G
Sbjct: 335 CRKFCTTGIDGAMTIWDFKTLESSIQG 361
>AB209059-1|BAD92296.1| 401|Homo sapiens actin related protein 2/3
complex subunit 1A variant protein.
Length = 401
Score = 78.2 bits (184), Expect = 2e-14
Identities = 33/86 (38%), Positives = 58/86 (67%)
Frame = -1
Query: 633 IXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSH 454
+ +V+KLD ++ +SAM++F+++D+ A E +T L+++HQN+I+ ++IY+ K
Sbjct: 311 LTFVSKLDIPKQSIQRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQD 370
Query: 453 TNKFSTSGLDGQLVIWDLDTLERSFE 376
KF T+G+DG + IWD TLE S +
Sbjct: 371 CRKFCTTGIDGAMTIWDFKTLESSIQ 396
>BC007555-1|AAH07555.1| 372|Homo sapiens actin related protein 2/3
complex, subunit 1B, 41kDa protein.
Length = 372
Score = 64.9 bits (151), Expect = 2e-10
Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Frame = -1
Query: 633 IXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIE---TSDTFLDSIHQNAISCINIYKGT 463
+ + +LD ++ GL+A ++FQ+LD+ A E + LDS+H+N++S I++ G
Sbjct: 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGG 338
Query: 462 KSHTNKFSTSGLDGQLVIWDLDTLERSFE 376
K+ ++F T+G+DG + IWD+ +LE + +
Sbjct: 339 KAKCSQFCTTGMDGGMSIWDVKSLESALK 367
>BC002988-1|AAH02988.2| 372|Homo sapiens actin related protein 2/3
complex, subunit 1B, 41kDa protein.
Length = 372
Score = 64.9 bits (151), Expect = 2e-10
Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Frame = -1
Query: 633 IXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIE---TSDTFLDSIHQNAISCINIYKGT 463
+ + +LD ++ GL+A ++FQ+LD+ A E + LDS+H+N++S I++ G
Sbjct: 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGG 338
Query: 462 KSHTNKFSTSGLDGQLVIWDLDTLERSFE 376
K+ ++F T+G+DG + IWD+ +LE + +
Sbjct: 339 KAKCSQFCTTGMDGGMSIWDVKSLESALK 367
>BC002562-1|AAH02562.1| 372|Homo sapiens actin related protein 2/3
complex, subunit 1B, 41kDa protein.
Length = 372
Score = 64.9 bits (151), Expect = 2e-10
Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Frame = -1
Query: 633 IXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIE---TSDTFLDSIHQNAISCINIYKGT 463
+ + +LD ++ GL+A ++FQ+LD+ A E + LDS+H+N++S I++ G
Sbjct: 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGG 338
Query: 462 KSHTNKFSTSGLDGQLVIWDLDTLERSFE 376
K+ ++F T+G+DG + IWD+ +LE + +
Sbjct: 339 KAKCSQFCTTGMDGGMSIWDVKSLESALK 367
>AF006084-1|AAB64189.1| 372|Homo sapiens p41-Arc protein.
Length = 372
Score = 64.9 bits (151), Expect = 2e-10
Identities = 30/89 (33%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Frame = -1
Query: 633 IXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIE---TSDTFLDSIHQNAISCINIYKGT 463
+ + +LD ++ GL+A ++FQ+LD+ A E + LDS+H+N++S I++ G
Sbjct: 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGG 338
Query: 462 KSHTNKFSTSGLDGQLVIWDLDTLERSFE 376
K+ ++F T+G+DG + IWD+ +LE + +
Sbjct: 339 KAKCSQFCTTGMDGGMSIWDVKSLESALK 367
>BC104483-1|AAI04484.1| 495|Homo sapiens SUV420H1 protein protein.
Length = 495
Score = 35.9 bits (79), Expect = 0.13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 648 HDGDDIXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISC 484
HD D+ YVAKL+N SG S K Q L R E ++ + +H+N + C
Sbjct: 361 HDNDNNLYVAKLNNGFNSGSGSSSTKLKIQ-LKRDE--ENRGSYTEGLHENGVCC 412
>BC103498-1|AAI03499.1| 885|Homo sapiens suppressor of variegation
4-20 homolog 1, isoform 1 protein.
Length = 885
Score = 35.9 bits (79), Expect = 0.13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 648 HDGDDIXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISC 484
HD D+ YVAKL+N SG S K Q L R E ++ + +H+N + C
Sbjct: 751 HDNDNNLYVAKLNNGFNSGSGSSSTKLKIQ-LKRDE--ENRGSYTEGLHENGVCC 802
>BC099714-1|AAH99714.1| 885|Homo sapiens suppressor of variegation
4-20 homolog 1 (Drosophila) protein.
Length = 885
Score = 35.9 bits (79), Expect = 0.13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 648 HDGDDIXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISC 484
HD D+ YVAKL+N SG S K Q L R E ++ + +H+N + C
Sbjct: 751 HDNDNNLYVAKLNNGFNSGSGSSSTKLKIQ-LKRDE--ENRGSYTEGLHENGVCC 802
>BC098121-1|AAH98121.1| 471|Homo sapiens SUV420H1 protein protein.
Length = 471
Score = 35.9 bits (79), Expect = 0.13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 648 HDGDDIXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISC 484
HD D+ YVAKL+N SG S K Q L R E ++ + +H+N + C
Sbjct: 337 HDNDNNLYVAKLNNGFNSGSGSSSTKLKIQ-LKRDE--ENRGSYTEGLHENGVCC 388
>BC012933-1|AAH12933.1| 414|Homo sapiens SUV420H1 protein protein.
Length = 414
Score = 35.9 bits (79), Expect = 0.13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 648 HDGDDIXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISC 484
HD D+ YVAKL+N SG S K Q L R E ++ + +H+N + C
Sbjct: 280 HDNDNNLYVAKLNNGFNSGSGSSSTKLKIQ-LKRDE--ENRGSYTEGLHENGVCC 331
>AK000046-1|BAA90905.1| 414|Homo sapiens protein ( Homo sapiens
cDNA FLJ20039 fis, clone COL00364. ).
Length = 414
Score = 35.9 bits (79), Expect = 0.13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = -1
Query: 648 HDGDDIXYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISC 484
HD D+ YVAKL+N SG S K Q L R E ++ + +H+N + C
Sbjct: 280 HDNDNNLYVAKLNNGFNSGSGSSSTKLKIQ-LKRDE--ENRGSYTEGLHENGVCC 331
>AL133230-3|CAI21688.2| 946|Homo sapiens chromosome 20 open reading
frame 175 protein.
Length = 946
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 153 CIFESFKFLRAEFTLDCFDLF 215
CI ESF FL A+F LD LF
Sbjct: 566 CILESFAFLNADFALDELSLF 586
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,662,124
Number of Sequences: 237096
Number of extensions: 1426513
Number of successful extensions: 2689
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2685
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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