Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c05
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical ...    54   7e-08
U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical pr...    32   0.31 
AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical...    29   2.9  
AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,...    29   2.9  
Z77653-3|CAB01126.1|  462|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z75551-5|CAA99935.1|  462|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AL110501-4|CAB54510.1|  368|Caenorhabditis elegans Hypothetical
           protein Y79H2A.6 protein.
          Length = 368

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
 Frame = -1

Query: 660 LLYCHDGDDIXYVAKLDNTQRKESGGL-SAMKKFQSLDRHARIETSDTFLDSIHQNAISC 484
           +L+    D +  V KLD     +S  + SA++ F+++DR+   E  +  L ++HQN I+ 
Sbjct: 274 VLFVVSQDVLKEVCKLDVPSAAKSSTVNSALQLFKNIDRNNAAEKINVALKTLHQNRITQ 333

Query: 483 INIYKGTKSHTNKFSTSGLDGQLVIWDL 400
           I  + GT  +  KF+T G DG + +WDL
Sbjct: 334 ILPHSGTVGNVVKFTTCGTDGIVALWDL 361


>U23139-7|AAK31492.1|  929|Caenorhabditis elegans Hypothetical
           protein F13H8.2 protein.
          Length = 929

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 534 ETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDL 400
           E S+  + S H+ A++CI       S    F+T G DG +V+WD+
Sbjct: 92  EDSEPIMFSGHKKAVNCIEF----SSDGLLFATGGKDGVIVLWDI 132


>AL132904-13|CAC35846.4|  778|Caenorhabditis elegans Hypothetical
           protein Y111B2A.17 protein.
          Length = 778

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 504 HQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDL 400
           HQ  I+ +   K ++   ++F T G+D ++V+W L
Sbjct: 59  HQKPITVLKRLKSSEIVADEFVTGGVDSRVVLWKL 93


>AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,
           light intermediateprotein 1 protein.
          Length = 643

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 504 HQNAISCINIYKGTKSHTNKFSTSGLDGQLVIWDLDTLERSFEG 373
           H   +SC+ +  GTK+  N  S S  DG++  W++D L +  +G
Sbjct: 384 HTYTVSCLAVV-GTKNAHNFVSLSR-DGRICSWNVDNLTQPVDG 425


>Z77653-3|CAB01126.1|  462|Caenorhabditis elegans Hypothetical
           protein T28H10.3 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 421 PARHMGLGHFGEVI*RNQDCLNKNCLRYFIYLFMQLIISLKR-VPKSLNKYINGESGEYI 245
           PAR + L H      ++ D L+ N L Y I    +   ++KR V   + K+ +GES + I
Sbjct: 322 PARDIELNHLISQHRKSNDLLSSNKLEYKINRIKETRRAIKRNVHMIVQKFFDGESEDLI 381

Query: 244 A 242
           +
Sbjct: 382 S 382


>Z75551-5|CAA99935.1|  462|Caenorhabditis elegans Hypothetical
           protein T28H10.3 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 421 PARHMGLGHFGEVI*RNQDCLNKNCLRYFIYLFMQLIISLKR-VPKSLNKYINGESGEYI 245
           PAR + L H      ++ D L+ N L Y I    +   ++KR V   + K+ +GES + I
Sbjct: 322 PARDIELNHLISQHRKSNDLLSSNKLEYKINRIKETRRAIKRNVHMIVQKFFDGESEDLI 381

Query: 244 A 242
           +
Sbjct: 382 S 382


>Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical
           protein F49C12.5b protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 567 KFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGL 427
           K  SL R   + TS  F+    QN +  ++IYK   +H N +  S +
Sbjct: 122 KPSSLKRDVVVCTSPLFVSEQWQNFLFAVHIYKKFDAHMNLYLVSSI 168


>Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical
           protein F49C12.5a protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 567 KFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGL 427
           K  SL R   + TS  F+    QN +  ++IYK   +H N +  S +
Sbjct: 149 KPSSLKRDVVVCTSPLFVSEQWQNFLFAVHIYKKFDAHMNLYLVSSI 195


>Z83319-1|CAB05908.1|  322|Caenorhabditis elegans Hypothetical
           protein T02D1.3 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 217 KNKSKQSRVNSARKNLKLSNIQNKQ*IIDTTCFIIIHFFY 98
           +NK K  ++  A ++L L+ +      I+   F++I+ FY
Sbjct: 233 RNKQKSKKLQRAERSLTLTTVSMLSAHINNLIFVMIYMFY 272


>AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical
           protein F59H6.2 protein.
          Length = 701

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 391 GEVI*RNQDCLNKNCLRYFIYLFMQLIISLKRVPKSLN 278
           G ++  +Q C+NK C RYF+    Q  +SL ++  +L+
Sbjct: 186 GNMLTESQKCVNKKCNRYFL---SQCNVSLSKMAVTLS 220


>Z98877-8|CAB63404.3|  475|Caenorhabditis elegans Hypothetical
           protein Y69H2.7 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -3

Query: 289 KSLNKYINGESGEYIAITVSSV*RKNKSKQSRVNSARKNLKLS 161
           KSL++Y + +S E IA TVSS  +  +S    V+S +K + L+
Sbjct: 68  KSLDEYASEKSKEIIAATVSSE-KIKESPPPAVSSVKKAVNLT 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,582
Number of Sequences: 27780
Number of extensions: 250528
Number of successful extensions: 673
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)