Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c05
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    27   0.21 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.4  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.0  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 346 LRYFIYLFMQLIISLKRVPKSLNKYINGESGEY 248
           + YFI+L+   ++  +R    L+K +    G+Y
Sbjct: 19  INYFIFLYFNSLVRFRRFTIELDKVLESPRGKY 51


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 378  QMTSPKCPSPI*RAGRRD 431
            ++TSP  P  I RAG RD
Sbjct: 1393 RLTSPPTPLSISRAGSRD 1410


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 43  SNLIL*FTKYINCLICQKYKKN 108
           SN+ +   K  N + C+KY+KN
Sbjct: 148 SNITMYDLKSHNDIYCEKYEKN 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,253
Number of Sequences: 438
Number of extensions: 3462
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)