Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c01
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    81   1e-16
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    28   0.91 
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.1  
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.9  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   4.9  

>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
 Frame = -1

Query: 561 STQVLLFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELERLP-VDVIRTDLYIRH 385
           ++QV+ F Y D L  S+             LS+NR+AEFHT LE +P   +   D Y+  
Sbjct: 74  ASQVIPF-YHDSLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEW 132

Query: 384 PLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAACIEKAYHTIPCAEAA 205
            ++LEQ +MEG+++K+     +     +++FM  ++  VR EIA C EK Y  IP + A 
Sbjct: 133 VISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNAT 192

Query: 204 RRLNLSSQQAVLEYGKKRNW 145
             L L + +   +  ++R W
Sbjct: 193 SLLYLENTKETEKLAEERGW 212


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = -1

Query: 453 AEFHTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLE 274
           AEF+ +L  L V+ ++  LY ++PL     +   S  ++    G V         DT  +
Sbjct: 97  AEFNPDLALLSVNTVQKTLYDKNPLTRSTAIRVMSSIRVPAINGIVLLAIQQCITDT-AD 155

Query: 273 TVRGEIAACIEKAYHTIP 220
            VR   A  I K Y   P
Sbjct: 156 RVRQSAALAITKCYSLDP 173


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 290 WIHF*KQFVERLQLALRKLTTQSLVPKPLDDLTCLLNKQYL 168
           W+++  QF+E L+ A   L T  L P  +      L   YL
Sbjct: 324 WMYYLWQFLENLRFATPLLVTAQLTPVGISGCAAALTTGYL 364


>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 417 QLEDAQVLCETRPLGFEKAGIIDSILTVGL 506
           +LEDA    + + +G E+ GII  ++T GL
Sbjct: 21  ELEDALNANQEKKIGLEQMGIIVQLVTEGL 50


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 10  LYNHLKMSGILNG-LLSQFSRWKNAREG 90
           LYNH K +G++ G  +SQF   +  R G
Sbjct: 219 LYNHFKQAGVVKGTAVSQFLDQRGFRYG 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,871
Number of Sequences: 5004
Number of extensions: 48734
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)