Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11c01
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 99 1e-21
03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672 29 2.1
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 29 2.1
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 29 2.8
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 29 2.8
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 28 5.0
11_06_0146 + 20621730-20621865,20621947-20622026,20622600-206226... 28 6.5
08_01_0824 - 8000829-8001272 28 6.5
08_01_0108 - 791835-792398 28 6.5
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 28 6.5
06_01_0664 + 4850445-4850879,4853155-4854186 28 6.5
04_04_1102 - 30909490-30909630,30909954-30910108,30910206-309104... 28 6.5
04_03_0284 + 13896307-13896765 28 6.5
08_02_0577 + 18890801-18891600,18892033-18892911,18903566-189037... 27 8.7
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 27 8.7
>07_03_0151 -
14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 99 bits (238), Expect = 1e-21
Identities = 49/101 (48%), Positives = 66/101 (65%)
Frame = -1
Query: 465 QNRVAEFHTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMD 286
QNR+AEFHTELE LPV + I+H + LEQ MEG+YN++ A+ VP E+Y +FMD
Sbjct: 119 QNRIAEFHTELELLPVTALENPC-IKHAVELEQSFMEGAYNRVLSARQAVPHETYVYFMD 177
Query: 285 TLLETVRGEIAACIEKAYHTIPCAEAARRLNLSSQQAVLEY 163
L +TVR E+A C EK Y + AEA + L SS + + +Y
Sbjct: 178 LLAKTVRDELAGCSEKGYDYMSIAEARQVLMFSSDKELHQY 218
>03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672
Length = 242
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -1
Query: 273 TVRGEIAACIEKAYHTIPCAEAARRLNLSSQQAVL 169
TV E+AA +++A P AEA RRL+LS AVL
Sbjct: 94 TVLVEVAAVMDEAEEA-PGAEARRRLDLSGAAAVL 127
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -1
Query: 273 TVRGEIAACIEKAYHTIPCAEAARRLNLSSQQAVL 169
TV E+AA +++A P AEA RRL+LS AVL
Sbjct: 53 TVLVEVAAVMDEAEEA-PGAEARRRLDLSGAAAVL 86
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -1
Query: 273 TVRGEIAACIEKAYHTIPCAEAARRLNLSSQQAVL 169
TV E+AA +++A P AEA RRL+LS AVL
Sbjct: 262 TVLVEVAAVMDQAEEA-PGAEARRRLDLSGVAAVL 295
>01_06_0866 -
32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 548 YYSITKTTSRSLHSQTNC*D*IYYTCFLKTEWPSFTQNLSVFQLM 414
Y+S+ T + TNC D C K E P+F + +V ++M
Sbjct: 282 YHSLGSTNPLPIAKSTNCADVHIQPCEFKDEKPAFPEPKTVLEVM 326
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -1
Query: 468 SQNRVAEFHTELERLPVDVIRTDLYI 391
S++RV+E+ L R+ VDV+RTD ++
Sbjct: 379 SKDRVSEWLWTLHRIVVDVVRTDSHL 404
>11_06_0146 +
20621730-20621865,20621947-20622026,20622600-20622686,
20622789-20622866,20622947-20623038,20623132-20623333,
20623644-20623734,20624163-20624221,20624413-20624561,
20624662-20624743,20624828-20625214
Length = 480
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 171 LEYGKKRNWRLGPDNCY-RFTSEELTSV 91
L+Y KR +LG D CY R EEL SV
Sbjct: 148 LDYAAKRIAQLGADKCYNRTLCEELLSV 175
>08_01_0824 - 8000829-8001272
Length = 147
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 261 EIAACIEKAYHTIPCAEAARRLNLSSQQAVL 169
E+AA +++A P AEA RRL+LS AVL
Sbjct: 57 EVAAVMDEAEEA-PGAEARRRLDLSGAAAVL 86
>08_01_0108 - 791835-792398
Length = 187
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 261 EIAACIEKAYHTIPCAEAARRLNLSSQQAVL 169
E+AA +++A P AEA RRL+LS AVL
Sbjct: 8 EVAAVMDEAEEA-PGAEARRRLDLSGAAAVL 37
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 27.9 bits (59), Expect = 6.5
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Frame = -1
Query: 447 FHTELERL-PVDVIRTDLYIRHPLA-LEQYLMEGSYNKIFLA-KGN-----VPAESYTFF 292
FH L R P ++ TD++ R + L Y + ++ A K N + Y
Sbjct: 630 FHCPLSRSSPESIVLTDMFTRLLMDYLNDYAYDAQVAGLYYAVKPNDTGFQITMVGYNDK 689
Query: 291 MDTLLETVRGEIAA 250
M TLLETV G+IAA
Sbjct: 690 MRTLLETVIGKIAA 703
>06_01_0664 + 4850445-4850879,4853155-4854186
Length = 488
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -1
Query: 330 AKGNVPAESYTFFMDTLLETVRGEIAACIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKR 151
++G V S+ F E+ AC E + CA A RL ++Q++ L GKK+
Sbjct: 414 SEGKVLLSSWRFIRQCRTAE-EAEVMACCEGL--KLACALVANRLASNTQESSLSLGKKK 470
Query: 150 NWR 142
R
Sbjct: 471 ERR 473
>04_04_1102 -
30909490-30909630,30909954-30910108,30910206-30910488,
30910618-30910755
Length = 238
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 254 QLALRKLTTQSLVPKPLDDLTCLL 183
Q A ++LTT++L K DD++C++
Sbjct: 210 QAAAKRLTTEALARKSKDDISCIV 233
>04_03_0284 + 13896307-13896765
Length = 152
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 261 EIAACIEKAYHTIPCAEAARRLNLSSQQAVL 169
E+AA +++A P AEA RRL+LS AVL
Sbjct: 8 EVAAVMDEAEEA-PGAEARRRLDLSGAAAVL 37
>08_02_0577 +
18890801-18891600,18892033-18892911,18903566-18903707,
18903726-18904355
Length = 816
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 315 PAESYTFFMDTLLETVRGEIAACIEKAYHTIPCAEAARR 199
P + F D L E ++ CIE+ H + CAE A R
Sbjct: 59 PTAAAKVFGDQLRELTH-DMEDCIERFLHRVSCAEGASR 96
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 323 PFAKNILL*LPSIKYCSRASGCLI*RSVLITSTGRRSSSV*NSATR 460
PF + + +PS+K C ++ G +V+IT T RRS+ + N T+
Sbjct: 400 PFPPDNISSIPSLKKCKKSKG----TNVVITDTDRRSARL-NKLTK 440
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,869
Number of Sequences: 37544
Number of extensions: 314892
Number of successful extensions: 771
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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