Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11c01
(603 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY084160-1|AAL89898.1| 264|Drosophila melanogaster RE36854p pro... 168 6e-42
AF145314-1|AAF08395.1| 264|Drosophila melanogaster 26S proteaso... 168 6e-42
AE014296-2760|AAF49445.1| 264|Drosophila melanogaster CG4157-PA... 168 6e-42
AY075229-1|AAL68096.1| 262|Drosophila melanogaster AT18239p pro... 116 2e-26
AE014296-2456|AAS65003.1| 262|Drosophila melanogaster CG11552-P... 116 2e-26
EF058010-1|ABL84945.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
EF058009-1|ABL84944.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
EF058008-1|ABL84943.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
EF058007-1|ABL84942.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
EF058006-1|ABL84941.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
EF058005-1|ABL84940.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
EF058004-1|ABL84939.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
EF058003-1|ABL84938.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
EF058002-1|ABL84937.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
EF058001-1|ABL84936.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
EF058000-1|ABL84935.1| 1200|Drosophila melanogaster Nup133 protein. 28 8.5
BT003226-1|AAO24981.1| 1200|Drosophila melanogaster LP09464p pro... 28 8.5
AY051721-1|AAK93145.1| 1020|Drosophila melanogaster LD25077p pro... 28 8.5
AE014297-3210|AAF56042.2| 1200|Drosophila melanogaster CG6958-PA... 28 8.5
>AY084160-1|AAL89898.1| 264|Drosophila melanogaster RE36854p
protein.
Length = 264
Score = 168 bits (408), Expect = 6e-42
Identities = 92/190 (48%), Positives = 114/190 (60%)
Frame = -1
Query: 582 SFREIHVSTQVLLFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELERLPVDVIRT 403
+F + +DY + ES + LS NRV++FHTELE L VDVI+
Sbjct: 78 AFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELLSVDVIQH 137
Query: 402 DLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAACIEKAYHTI 223
+ +IR LALEQY+MEG YNKIF AK VP E Y++FMD LLETVR EI ACIEK+Y I
Sbjct: 138 NQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYDKI 197
Query: 222 PCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAFSGILPSAELAQQTI 43
+AA+RLNL + +G KR W+L Y FT SV +LPS ELA+Q +
Sbjct: 198 SAKDAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDR---SVKPKELLPSEELAEQVL 254
Query: 42 EYARHLEMIV 13
YAR LEMIV
Sbjct: 255 SYARDLEMIV 264
Score = 36.7 bits (81), Expect = 0.024
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2
Query: 602 VAVKDVKAFERYMSQLKCYY 543
V KD+ AFERYM+QLKCYY
Sbjct: 71 VLSKDLLAFERYMAQLKCYY 90
>AF145314-1|AAF08395.1| 264|Drosophila melanogaster 26S proteasome
regulatory complexsubunit p30 protein.
Length = 264
Score = 168 bits (408), Expect = 6e-42
Identities = 92/190 (48%), Positives = 114/190 (60%)
Frame = -1
Query: 582 SFREIHVSTQVLLFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELERLPVDVIRT 403
+F + +DY + ES + LS NRV++FHTELE L VDVI+
Sbjct: 78 AFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELLSVDVIQH 137
Query: 402 DLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAACIEKAYHTI 223
+ +IR LALEQY+MEG YNKIF AK VP E Y++FMD LLETVR EI ACIEK+Y I
Sbjct: 138 NQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYDKI 197
Query: 222 PCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAFSGILPSAELAQQTI 43
+AA+RLNL + +G KR W+L Y FT SV +LPS ELA+Q +
Sbjct: 198 SAKDAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDR---SVKPKELLPSEELAEQVL 254
Query: 42 EYARHLEMIV 13
YAR LEMIV
Sbjct: 255 SYARDLEMIV 264
Score = 36.7 bits (81), Expect = 0.024
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2
Query: 602 VAVKDVKAFERYMSQLKCYY 543
V KD+ AFERYM+QLKCYY
Sbjct: 71 VLSKDLLAFERYMAQLKCYY 90
>AE014296-2760|AAF49445.1| 264|Drosophila melanogaster CG4157-PA
protein.
Length = 264
Score = 168 bits (408), Expect = 6e-42
Identities = 92/190 (48%), Positives = 114/190 (60%)
Frame = -1
Query: 582 SFREIHVSTQVLLFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELERLPVDVIRT 403
+F + +DY + ES + LS NRV++FHTELE L VDVI+
Sbjct: 78 AFERYMAQLKCYYYDYAKIIGESESKYKLLGLNLLYLLSGNRVSDFHTELELLSVDVIQH 137
Query: 402 DLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAACIEKAYHTI 223
+ +IR LALEQY+MEG YNKIF AK VP E Y++FMD LLETVR EI ACIEK+Y I
Sbjct: 138 NQFIRPILALEQYIMEGRYNKIFQAKSTVPVEVYSYFMDLLLETVRDEIGACIEKSYDKI 197
Query: 222 PCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAFSGILPSAELAQQTI 43
+AA+RLNL + +G KR W+L Y FT SV +LPS ELA+Q +
Sbjct: 198 SAKDAAKRLNLRVPDEIKAFGAKRQWKLEASGDYSFTDR---SVKPKELLPSEELAEQVL 254
Query: 42 EYARHLEMIV 13
YAR LEMIV
Sbjct: 255 SYARDLEMIV 264
Score = 36.7 bits (81), Expect = 0.024
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -2
Query: 602 VAVKDVKAFERYMSQLKCYY 543
V KD+ AFERYM+QLKCYY
Sbjct: 71 VLSKDLLAFERYMAQLKCYY 90
>AY075229-1|AAL68096.1| 262|Drosophila melanogaster AT18239p
protein.
Length = 262
Score = 116 bits (280), Expect = 2e-26
Identities = 68/191 (35%), Positives = 100/191 (52%), Gaps = 1/191 (0%)
Frame = -1
Query: 582 SFREIHVSTQVLLFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELERLPVDVIRT 403
+F +DY +L S + L+ NR+A+FH ELERLP ++
Sbjct: 75 AFERYMAQLNTYYYDYDKYLESSKHMYKFMGLNLLYMLATNRLADFHIELERLPTALLLH 134
Query: 402 DLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAACIEKAYHTI 223
D +I+ LALE Y MEG YNKI AK ++P+E Y+ FMD L+ T R EIA+C+EK+Y +
Sbjct: 135 DSFIQPVLALENYYMEGRYNKILQAKKSMPSEIYSNFMDILVNTAREEIASCMEKSYLKM 194
Query: 222 PCAEAARRLNL-SSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAFSGILPSAELAQQT 46
AA+RL L + + E KR W L + Y + + +P+ ++A
Sbjct: 195 APKLAAQRLGLRPGSKELFELATKRQWCLDEEGNYDYAGLHTRPME---KVPAKDIATHN 251
Query: 45 IEYARHLEMIV 13
+ YA+ LE IV
Sbjct: 252 LTYAQELEKIV 262
Score = 32.3 bits (70), Expect = 0.52
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 602 VAVKDVKAFERYMSQLKCYY 543
+ +KD AFERYM+QL YY
Sbjct: 68 ITIKDYAAFERYMAQLNTYY 87
>AE014296-2456|AAS65003.1| 262|Drosophila melanogaster CG11552-PA
protein.
Length = 262
Score = 116 bits (280), Expect = 2e-26
Identities = 68/191 (35%), Positives = 100/191 (52%), Gaps = 1/191 (0%)
Frame = -1
Query: 582 SFREIHVSTQVLLFDYKDHLPESAFTNQXXXXXXXXXLSQNRVAEFHTELERLPVDVIRT 403
+F +DY +L S + L+ NR+A+FH ELERLP ++
Sbjct: 75 AFERYMAQLNTYYYDYDKYLESSKHMYKFMGLNLLYMLATNRLADFHIELERLPTALLLH 134
Query: 402 DLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDTLLETVRGEIAACIEKAYHTI 223
D +I+ LALE Y MEG YNKI AK ++P+E Y+ FMD L+ T R EIA+C+EK+Y +
Sbjct: 135 DSFIQPVLALENYYMEGRYNKILQAKKSMPSEIYSNFMDILVNTAREEIASCMEKSYLKM 194
Query: 222 PCAEAARRLNL-SSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSVAFSGILPSAELAQQT 46
AA+RL L + + E KR W L + Y + + +P+ ++A
Sbjct: 195 APKLAAQRLGLRPGSKELFELATKRQWCLDEEGNYDYAGLHTRPME---KVPAKDIATHN 251
Query: 45 IEYARHLEMIV 13
+ YA+ LE IV
Sbjct: 252 LTYAQELEKIV 262
Score = 32.3 bits (70), Expect = 0.52
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 602 VAVKDVKAFERYMSQLKCYY 543
+ +KD AFERYM+QL YY
Sbjct: 68 ITIKDYAAFERYMAQLNTYY 87
>EF058010-1|ABL84945.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>EF058009-1|ABL84944.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>EF058008-1|ABL84943.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>EF058007-1|ABL84942.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>EF058006-1|ABL84941.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>EF058005-1|ABL84940.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>EF058004-1|ABL84939.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>EF058003-1|ABL84938.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>EF058002-1|ABL84937.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>EF058001-1|ABL84936.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLNLTNSVPTAELEAEKIEFHQHDDRIL 470
>EF058000-1|ABL84935.1| 1200|Drosophila melanogaster Nup133 protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>BT003226-1|AAO24981.1| 1200|Drosophila melanogaster LP09464p
protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
>AY051721-1|AAK93145.1| 1020|Drosophila melanogaster LD25077p
protein.
Length = 1020
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 248 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 290
>AE014297-3210|AAF56042.2| 1200|Drosophila melanogaster CG6958-PA
protein.
Length = 1200
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -1
Query: 141 LGPDNCYRFTSEELTSVAFSGILPSAELAQQTIEYARHLEMIV 13
+G + Y +TS+ + + + +P+AEL + IE+ +H + I+
Sbjct: 428 VGSSHIYLYTSKVVYPLHLTNSVPTAELEAEKIEFHQHDDRIL 470
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,873,029
Number of Sequences: 53049
Number of extensions: 545731
Number of successful extensions: 1885
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1882
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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