Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11c01
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical pr...   103   1e-22
U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z99288-7|CAB63421.1|  362|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical pr...    28   4.5  
L16622-6|AAA27913.2|  408|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF016439-5|AAB65900.1|  630|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical
           protein ZK20.5 protein.
          Length = 250

 Score =  103 bits (246), Expect = 1e-22
 Identities = 53/150 (35%), Positives = 88/150 (58%)
 Frame = -1

Query: 462 NRVAEFHTELERLPVDVIRTDLYIRHPLALEQYLMEGSYNKIFLAKGNVPAESYTFFMDT 283
           NR+++FH  LE++P     ++ YI  P+ +EQ LMEG+YNK+ L + N+P+  YT F+  
Sbjct: 104 NRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLMEGAYNKVVLTEKNIPSPFYTIFIRI 163

Query: 282 LLETVRGEIAACIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEE 103
           +L+T+R EIA  IEK++  +   +A   L   + + + ++G++R W L  +  Y F  E 
Sbjct: 164 MLDTIRREIATSIEKSFKVLTAKDATVMLLFDNDEQMKKFGQERKWHLDGER-YVFEIEV 222

Query: 102 LTSVAFSGILPSAELAQQTIEYARHLEMIV 13
                 +  L +  +A QT+ YA+ LE IV
Sbjct: 223 AQEKPVN--LDTVRVATQTLFYAKQLEQIV 250


>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 207 ARRLNLSSQQAVLEYGKKRNWRLGPDNCYRFTSEELTSV-AFSGILPSAELAQQTIEYAR 31
           A   N   ++ V+  G+K   +L  D CY F  E LT +     ++P   +  Q +E  +
Sbjct: 19  ATEKNEKQERVVMSQGEKLEEKLFVDECYLFQDETLTPIFCKPKLIPLKTITTQKLEKMQ 78

Query: 30  HLEM 19
             +M
Sbjct: 79  REQM 82


>Z99288-7|CAB63421.1|  362|Caenorhabditis elegans Hypothetical
           protein ZK262.8 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -1

Query: 141 LGPDNCYRFTSEELTSVAFSG---ILPSAELAQQTIEYARHLEMIV 13
           LG   CY + + + TS +      ++ + E  ++++EY R LEM++
Sbjct: 294 LGTKRCYEYRATDPTSASERNNELVMSTLEGIRESVEYLRSLEMVL 339


>U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical
           protein C37A2.3 protein.
          Length = 442

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 120 RFTSEELTSVAFSGILPSAELAQQTIEYAR 31
           +F  E L +VA  G+LP  +   +TIEYAR
Sbjct: 295 QFNDERLVTVAV-GLLPLQKCIDETIEYAR 323


>L16622-6|AAA27913.2|  408|Caenorhabditis elegans Hypothetical
           protein C02D5.1 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 120 RFTSEELTSVAFSGILPSAELAQQTIEYAR 31
           +F  E L +VA  G+LP  +   +TIEYAR
Sbjct: 261 QFNDERLVTVAV-GLLPLQKCINETIEYAR 289


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 529  PPPGVCIHKPTVRIESIIPAFSKP-SGRVSHRT 434
            PPP V    PT  I +++P  S P SG VS  T
Sbjct: 2205 PPPSVATAGPTGPILTVVPVSSAPTSGAVSSTT 2237


>AF016439-5|AAB65900.1|  630|Caenorhabditis elegans Hypothetical
           protein R02F11.4 protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
 Frame = -1

Query: 468 SQNRVAEFHTELERL-PVDVIRTDLYIRHPLALEQYLMEGSYNKI--FLAKGNVPAESYT 298
           + N++++  T  + + P ++   D+       L Q+ +  ++ K+  F+  GN    S T
Sbjct: 193 ADNKISDLTTITKLICPTNLKNLDISSNSIEDLSQFSVLSTFKKLEEFVVAGN---PSIT 249

Query: 297 FFMDTLLETVRGEIAACIEKAYHTIPCAEAARRLNLSSQQAVLEYGKKRNWRLGPDN 127
             +D+ L   R  I AC  +  HTI   +   ++    +   L+   K   ++GP N
Sbjct: 250 SVLDSDLFDYRSYIFACCSEQLHTIDGQKIEDQVQTEGEWLALQGSIK---KIGPGN 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,782,981
Number of Sequences: 27780
Number of extensions: 277277
Number of successful extensions: 672
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)