Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b23
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    25   6.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   6.5  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   8.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 301 PPIEPYSCPPSSDPRAKPT-PSSMPATMP 384
           PP  P S PPS  P A P+ P   PA  P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448



 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
 Frame = +1

Query: 301 PPIEPYSCP-----PSSDPRAKPTPSSMPATMP 384
           PP  P   P     P S P A P P+ MPA  P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +1

Query: 301  PPIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA 444
            PP+ P S  P       P P  M    P +    P+G   A  P + A
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 159 TNEPSHLRLITIVIRPTGISPIEFQEHCGVQGGRDHRQYAEHSERISTAHRTVQL 323
           T+ PSH   +   ++PT I+  E  +      G   +  A+H E++ T   T  L
Sbjct: 122 TSRPSHTLWVLQPLKPTRITRQEIGQQLTETLGFGAQLLAQHLEKLQTVPSTDSL 176


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 301 PPIEPYSCPPSSDPRAKPTPSSMPA 375
           PPI P + P +  P    +P ++PA
Sbjct: 252 PPIPPQALPANGTPNTLASPVTLPA 276


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 325 PPSSDPRAKPTPSSMPATMP 384
           PPSSDP + P  SS+  + P
Sbjct: 98  PPSSDPFSSPLSSSLHRSSP 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,585
Number of Sequences: 5004
Number of extensions: 46042
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)