Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b23
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0070 - 542603-542686,542803-543441 34 0.077
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 31 0.95
12_01_0927 + 9196230-9196427,9196499-9197190,9197317-9198351,919... 30 1.3
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 30 1.3
02_05_0686 - 30900748-30902167,30903442-30904742 30 1.7
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418... 30 1.7
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 29 2.2
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 29 2.9
09_02_0349 - 7632140-7632234,7632348-7632449,7632864-7632962,763... 29 2.9
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 29 2.9
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 29 3.8
09_02_0543 + 10427321-10428315,10428440-10429154 28 5.1
08_01_0059 - 394001-394708 28 5.1
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 28 5.1
07_01_0126 - 947072-948687,949454-949627,950117-951572 28 5.1
04_03_0904 + 20717005-20718087 28 5.1
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 5.1
01_01_0616 + 4586086-4586835 28 5.1
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 6.7
11_06_0610 - 25449085-25453284 28 6.7
10_06_0036 - 9914606-9915561,9916287-9916368 28 6.7
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 28 6.7
08_02_0597 + 19132492-19133230,19133827-19134371,19134563-19135264 28 6.7
06_03_1310 + 29238644-29240260 28 6.7
02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202 28 6.7
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 28 6.7
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976... 27 8.9
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 27 8.9
09_02_0369 - 8012470-8013120 27 8.9
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 27 8.9
04_01_0365 - 4796780-4796971,4797246-4797327,4797417-4797527,479... 27 8.9
02_05_0897 + 32603060-32603387,32604348-32604589,32604681-326048... 27 8.9
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094... 27 8.9
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 34.3 bits (75), Expect = 0.077
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 301 PPIEPYSCPPSSDPRAKPTPSSMPATMPWTV--AE*PSGAT*AAYPTIVA*QRAYVGPCI 474
PP+ P PP S P A P P+ P+T P AE P+ A P VA A + P
Sbjct: 103 PPVTP---PPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVAEAPAELPPAE 159
Query: 475 IPSINTNCH 501
P+ + N H
Sbjct: 160 APTKSKNKH 168
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 301 PPIEPYSCPPSSDPRAKPTPSSMPA-TMPWTVAE*PSGAT*AAYPTIVA 444
PP+ P + PP+ P A P P +PA +P + P+ A A P I A
Sbjct: 63 PPLPPLTPPPAIVPPALPPPPPLPAIVVPPALPPTPAIAVPPALPPIPA 111
>12_01_0927 +
9196230-9196427,9196499-9197190,9197317-9198351,
9198437-9198688,9198769-9198879,9198969-9199050,
9199325-9199516
Length = 853
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/64 (35%), Positives = 29/64 (45%)
Frame = +1
Query: 304 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCIIPS 483
P P S PP P +PTP P+ P A P A+ PT +A Q A P PS
Sbjct: 410 PRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQAS----PTSLAKQHAPPAP---PS 462
Query: 484 INTN 495
+ T+
Sbjct: 463 VQTS 466
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 301 PPIEPYSCPPSSDPRAKPTPSSMPAT-MPW-TVAE*PSGAT 417
PP P PPSS P P+P++ P T W + E GAT
Sbjct: 91 PPPSPPPPPPSSPPPVPPSPTAAPTTGQSWNSEPERKEGAT 131
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 298 RPPIEPYSCPPSSDPRAKPTPSSMPATMP 384
RPP P SS PR+ P+P+ PA P
Sbjct: 253 RPPSTPAITAVSSVPRSSPSPAPAPAARP 281
>02_02_0663 -
12740733-12741104,12741260-12741326,12741709-12741809,
12741852-12742273,12743678-12743685,12745164-12745396
Length = 400
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 295 YRPPIEPYSCPPSSDPRAKPTPSS 366
Y PP PY P + PRA P P+S
Sbjct: 50 YLPPPPPYPIPQPARPRAAPPPAS 73
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 277 LNTRNEYRPPIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRA 456
++ EY P +PY P S+ P+ S+ P T P+ + + A YP A
Sbjct: 1 MHPSGEYSPYYQPYPSPTSAPLATYPSASAPPYT-PYPATDYAAPAAYPTYPPPPADPPQ 59
Query: 457 YVGPCIIP 480
Y P P
Sbjct: 60 YAPPPAAP 67
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/64 (35%), Positives = 28/64 (43%)
Frame = +1
Query: 304 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCIIPS 483
P P S PP P +PTP P+ P A P A+ PT A Q A P PS
Sbjct: 487 PRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQAS----PTSPAKQHAPPAP---PS 539
Query: 484 INTN 495
+ T+
Sbjct: 540 VQTS 543
>09_02_0349 -
7632140-7632234,7632348-7632449,7632864-7632962,
7633517-7633622,7633897-7633978,7634068-7634178,
7634259-7634510,7634596-7635688,7636157-7636829,
7636920-7637117
Length = 936
Score = 29.1 bits (62), Expect = 2.9
Identities = 23/64 (35%), Positives = 28/64 (43%)
Frame = +1
Query: 304 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCIIPS 483
P P S PP P +PTP P+ P A P A+ PT A Q A P PS
Sbjct: 423 PRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQAS----PTSPAKQHAPPAP---PS 475
Query: 484 INTN 495
+ T+
Sbjct: 476 VQTS 479
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +1
Query: 301 PPIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PS 408
PP PY PP P K S PA TV PS
Sbjct: 222 PPPPPYQSPPYKSPPYKSPQSRQPAPPTTTVNNNPS 257
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +1
Query: 304 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGP 468
P P S PP P +PTP P+ P +A P A+ PT A Q A P
Sbjct: 422 PRHPSSPPPLRSPPRQPTPPPSPSQQPPLLAPQPVQAS----PTSPAKQHAPPAP 472
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 301 PPIEPYSCPPSSDPRAKPTP-SSMPATMPW 387
PP + PP P A P+P S P+ PW
Sbjct: 59 PPAPDMTPPPGPGPAAAPSPHSPSPSNAPW 88
>08_01_0059 - 394001-394708
Length = 235
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 301 PPIEPYSCPPSSDPRAKPTPS-SMPATMP 384
P PY+ PP S P A P P S PA +P
Sbjct: 38 PTPRPYAPPPPSHPLAPPPPHISPPAPVP 66
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 307 IEPYSCPPSSDPRAKPTPSSMPATMP 384
+ P+ PPS PRA +PS+ P P
Sbjct: 491 LSPWWSPPSPHPRATSSPSTSPRCSP 516
>07_01_0126 - 947072-948687,949454-949627,950117-951572
Length = 1081
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 363 VHAGHYALDSRRVTVRGHMSRVPDYSSVAKGICRALHNPLYQHQLPRIPNERYQRH 530
++ G+Y LDS R GH P V+ ++ NP + + R+ + Q H
Sbjct: 71 MYRGYYTLDSFRC--HGHQEYNPKDLEVSSSFAPSMFNPAKRVRFCRVTGQSVQEH 124
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 298 RPPIEPYSCPPSSDPRAKPTPSSMPAT 378
+P PY+ PP+ P+ KPTP+ P T
Sbjct: 266 KPTPTPYT-PPTYKPQPKPTPTPTPYT 291
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +1
Query: 301 PPIEPYSCPPSSDPRAKPTPSSMPATMP 384
PP PP PR KP P+ P P
Sbjct: 86 PPAGVEDAPPRRSPREKPCPTMQPPVKP 113
>01_01_0616 + 4586086-4586835
Length = 249
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 188 HHRHSSNRNQPDRIPRTLRRAGR 256
HHRH + + PD + R RR GR
Sbjct: 125 HHRHHHDPSLPDAVLRVERRGGR 147
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 298 RPPIEPYSCPPSSDPRAKPTPSSMPATMPWTVA 396
RPP P PP P P P P ++P +A
Sbjct: 619 RPPGAPPPPPPPGKPGGPPPPPPRPGSLPRNLA 651
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 292 EYRPPIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PS 408
EY PP P S PP + ++ PTP++ + P PS
Sbjct: 538 EYSPPATPESSPP-PEGKSPPTPTASHSPPPVPEGHTPS 575
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 280 NTRNEYRPPIEPYSCPPSSDPRAKPTP-SSMPATMPWTVAE*PSG 411
N E P + P + PPS+ P P +S P +MP T E +G
Sbjct: 184 NAPPEVVPSVPPAAAPPSTPVVVVPAPATSPPMSMPATPPEAAAG 228
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +1
Query: 313 PYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYP 432
P PP SD A P P PA P A +G A P
Sbjct: 142 PQQAPPPSDAAAPPPPPPPPAAAPAAPAPVAAGTKGIATP 181
>08_02_0597 + 19132492-19133230,19133827-19134371,19134563-19135264
Length = 661
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 261 DHRQYAEHSERISTAHRTVQLSA*QRSQGETHAVVHAGHYALDSRRVTVRGH 416
D QY + +E I R + + R H AGH+A+ R +++ H
Sbjct: 96 DGEQYVQCAEMIHGRARHLLGATNNRGDTPLHCAARAGHHAMVCRLISLAAH 147
>06_03_1310 + 29238644-29240260
Length = 538
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 313 PYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGA 414
P PP+ P + PTPS +P P T +E P +
Sbjct: 391 PRRTPPTPPPPSSPTPSHLPPPPP-TYSESPKSS 423
>02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202
Length = 580
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 295 YRPPIEPYSCPPSSDPRAKPTPSSMPATMPW 387
Y PP PY+ P + P P P P P+
Sbjct: 128 YYPPYPPYNTPWNIPPYQHPPPPHTPLNQPF 158
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 301 PPIEPYSCPPSSDPRAKPTPSSMPATMPWTV 393
PP + PPSSDP PS+ PA TV
Sbjct: 80 PPAPAPANPPSSDPMPGGAPSAAPAAGAATV 110
>12_01_0969 -
9765114-9765664,9767963-9768512,9769507-9769561,
9769918-9769980,9770547-9771325
Length = 665
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 301 PPIEPYSCPPSSDPRAKPTPSSMPATMPW 387
PP+ PY+ +S P P P+S +P+
Sbjct: 25 PPVRPYASSAASPPPPPPPPASAYVHLPF 53
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 298 RPPIEPYSCPPSSDPRAKPTPSSMPATMPWTVA 396
RPP P PP P P P P ++P +A
Sbjct: 924 RPPGAPPPPPPPGKPGGPPPPPPPPGSLPRNLA 956
>09_02_0369 - 8012470-8013120
Length = 216
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 325 PPSSDPRAKPTPSSMPATMP 384
PP +P KP PS PA +P
Sbjct: 64 PPPDEPPLKPPPSFYPAVLP 83
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +1
Query: 304 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCIIPS 483
P P S PP P +PTP P+ P A P A+ PT A + A P PS
Sbjct: 533 PRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQAS----PTSPAKKHAPPAP---PS 585
Query: 484 INTN 495
+ T+
Sbjct: 586 VQTS 589
>04_01_0365 -
4796780-4796971,4797246-4797327,4797417-4797527,
4797608-4797859,4797945-4800115
Length = 935
Score = 27.5 bits (58), Expect = 8.9
Identities = 22/64 (34%), Positives = 27/64 (42%)
Frame = +1
Query: 304 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCIIPS 483
P P S PP P +PTP P+ P P A+ PT A Q A P PS
Sbjct: 492 PRHPPSPPPLRSPPRQPTPPPSPSQQPPLPVPQPVQAS----PTSPAKQHAPPAP---PS 544
Query: 484 INTN 495
+ T+
Sbjct: 545 VQTS 548
>02_05_0897 +
32603060-32603387,32604348-32604589,32604681-32604824,
32604889-32605050,32605129-32605212,32605528-32605601,
32605850-32606039,32606120-32606275,32606368-32606465,
32606976-32607102,32607193-32607292,32607402-32607572,
32607790-32607838,32607912-32608003,32608705-32608774,
32608999-32609023,32609059-32609293,32609425-32609525,
32609614-32609865
Length = 899
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 298 RPPIEPYSCPPSSDPRAKPTPSSMPATMP 384
R P+ P+ P DP A P P+ M MP
Sbjct: 658 RTPLRPFQTP-LRDPGATPVPNGMRTPMP 685
>02_05_0405 +
28708077-28708391,28708478-28708573,28709030-28709450,
28710051-28710141,28710483-28710819,28710905-28711053,
28711782-28712295
Length = 640
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 316 YSCPPSSDPRAKPTPSSMPATMP 384
+S PP+ P A+P P + PA P
Sbjct: 40 FSAPPTPPPAAQPPPPTPPAPAP 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,643
Number of Sequences: 37544
Number of extensions: 338382
Number of successful extensions: 1640
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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