Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b23
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 30 1.1
Z99266-1|CAB16464.1| 292|Caenorhabditis elegans F15C11.2 protein. 30 1.5
Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical pr... 30 1.5
U39648-3|AAM15603.1| 434|Caenorhabditis elegans Hypothetical pr... 28 4.6
U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF025460-2|AAF02169.3| 545|Caenorhabditis elegans Prion-like-(q... 28 6.0
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z54327-1|CAA91119.1| 569|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z32673-1|CAA83585.1| 472|Caenorhabditis elegans transcription f... 27 8.0
U41535-12|AAK67251.1| 438|Caenorhabditis elegans Abnormal cell ... 27 8.0
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 27 8.0
AL032635-1|CAA21600.1| 382|Caenorhabditis elegans Hypothetical ... 27 8.0
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 27 8.0
AJ130957-1|CAA10262.1| 438|Caenorhabditis elegans LIN-26B protein. 27 8.0
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 27 8.0
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 27 8.0
AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical ... 27 8.0
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 8.0
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 328 PSSDPRAKP-TPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCIIPS 483
PSS P P TP+ PA +P T + T A P +V ++ P +IPS
Sbjct: 747 PSSAPSIVPSTPTISPAPLPTTGSSGGPDVTTPAPPVMVTGPLIFIIPTVIPS 799
>Z99266-1|CAB16464.1| 292|Caenorhabditis elegans F15C11.2 protein.
Length = 292
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 286 RNEYRPPIEPYSCPP--SSDPRAKPTPSSMP 372
RN+ RP P + P SS P + PTPSS P
Sbjct: 79 RNQARPTPAPAAATPTASSAPSSNPTPSSQP 109
>Z98262-3|CAD44156.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 286 RNEYRPPIEPYSCPP--SSDPRAKPTPSSMP 372
RN+ RP P + P SS P + PTPSS P
Sbjct: 79 RNQARPTPAPAAATPTASSAPSSNPTPSSQP 109
>Z98262-1|CAB10932.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 286 RNEYRPPIEPYSCPP--SSDPRAKPTPSSMP 372
RN+ RP P + P SS P + PTPSS P
Sbjct: 79 RNQARPTPAPAAATPTASSAPSSNPTPSSQP 109
>Z71260-4|CAD44116.1| 454|Caenorhabditis elegans Hypothetical
protein F15C11.2c protein.
Length = 454
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 286 RNEYRPPIEPYSCPP--SSDPRAKPTPSSMP 372
RN+ RP P + P SS P + PTPSS P
Sbjct: 79 RNQARPTPAPAAATPTASSAPSSNPTPSSQP 109
>Z71260-2|CAA95799.1| 502|Caenorhabditis elegans Hypothetical
protein F15C11.2a protein.
Length = 502
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 286 RNEYRPPIEPYSCPP--SSDPRAKPTPSSMP 372
RN+ RP P + P SS P + PTPSS P
Sbjct: 79 RNQARPTPAPAAATPTASSAPSSNPTPSSQP 109
>U39648-3|AAM15603.1| 434|Caenorhabditis elegans Hypothetical
protein T13C5.2 protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 322 CPPSSDPRAKPTPSSMPATMPWTVA 396
CPP + PR SS+PA P T+A
Sbjct: 376 CPPGTTPRVNLFGSSIPAPTPATLA 400
>U97408-3|AAB93343.1| 339|Caenorhabditis elegans Hypothetical
protein F48A9.1 protein.
Length = 339
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 161 QRTESPSAYHHRHS--SNRNQPDRIPRTLRRAGRPRSPPIR*TLGTNI 298
++ ++ YHHR S SNR+ R+LR R SP R + GT++
Sbjct: 237 EQNQNRERYHHRRSKSSNRDDASVSHRSLRH--RSMSPASRRSFGTSL 282
>AF025460-2|AAF02169.3| 545|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 41
protein.
Length = 545
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 295 YRPPIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE 399
+ PP S P PR TP + PAT P T ++
Sbjct: 92 HAPPPPASSAPIVGAPRQGATPQAAPATTPATTSQ 126
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 289 NEYRPPIEPYSCPPSSDPRAKPTPSSMP 372
N RPP EP C P + P KP P P
Sbjct: 118 NPGRPPKEP--CEPITPPPCKPCPEGPP 143
>Z54327-1|CAA91119.1| 569|Caenorhabditis elegans Hypothetical
protein C26D10.1 protein.
Length = 569
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 221 DRIPRTLRRAGRPRSPP 271
D +P+T RRAGRP+ P
Sbjct: 68 DNVPKTPRRAGRPKKLP 84
>Z32673-1|CAA83585.1| 472|Caenorhabditis elegans transcription
factor protein.
Length = 472
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +3
Query: 438 SSVAKGICRALHNPLYQ----HQLPRIPNERYQRHS-NSVTEQ*KRQRRSVAPALYYLPE 602
SS+ K + R HNPL+Q H L ++ ++H N + Q K Q R A L +
Sbjct: 142 SSIEKQLQRTSHNPLHQLSTPHALSQLQKLLEEQHKINQMNIQKKEQERQQAEIQRILLQ 201
Query: 603 Q 605
Q
Sbjct: 202 Q 202
>U41535-12|AAK67251.1| 438|Caenorhabditis elegans Abnormal cell
lineage protein 26 protein.
Length = 438
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +3
Query: 438 SSVAKGICRALHNPLYQ----HQLPRIPNERYQRHS-NSVTEQ*KRQRRSVAPALYYLPE 602
SS+ K + R HNPL+Q H L ++ ++H N + Q K Q R A L +
Sbjct: 108 SSIEKQLQRTSHNPLHQLSTPHALSQLQKLLEEQHKINQMNIQKKEQERQQAEIQRILLQ 167
Query: 603 Q 605
Q
Sbjct: 168 Q 168
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 289 NEYRPPIEPYSCPPSSDPRAKPTPSSMPATMPW--TVAE 399
N + IE + P + P K TPS + +PW TV E
Sbjct: 234 NFNKSAIEAFGVPVAISPDVKTTPSKKSSRVPWVCTVCE 272
>AL032635-1|CAA21600.1| 382|Caenorhabditis elegans Hypothetical
protein Y51A2A.1 protein.
Length = 382
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 304 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGA 414
P P + P S +P ++MP W + + PSGA
Sbjct: 96 PTAPTTEVPISSTATEPVTTAMPCPTDWMMFDRPSGA 132
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 289 NEYRPPIEPYSCPPSSDPRAKPTPSSMP 372
N RPP EP C P + P KP P P
Sbjct: 120 NPGRPPKEP--CEPLTPPPCKPCPEGPP 145
>AJ130957-1|CAA10262.1| 438|Caenorhabditis elegans LIN-26B protein.
Length = 438
Score = 27.5 bits (58), Expect = 8.0
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +3
Query: 438 SSVAKGICRALHNPLYQ----HQLPRIPNERYQRHS-NSVTEQ*KRQRRSVAPALYYLPE 602
SS+ K + R HNPL+Q H L ++ ++H N + Q K Q R A L +
Sbjct: 108 SSIEKQLQRTSHNPLHQLSTPHALSQLQKLLEEQHKINQMNIQKKEQERQQAEIQRILLQ 167
Query: 603 Q 605
Q
Sbjct: 168 Q 168
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +1
Query: 289 NEYRPPIEPYSCPPSSDPRAKPTPSSMPATMPW--TVAE 399
N + IE + P + P K TPS + +PW TV E
Sbjct: 234 NFNKSAIEAFGVPVAISPDVKTTPSKKSSRVPWVCTVCE 272
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = +1
Query: 310 EPYSCPP----SSDPRAKPTPSSMPATMPWTVAE*PS 408
+PYS PP S P P P P+ P+TV PS
Sbjct: 363 KPYSPPPIYTSPSPPELPPNPVEAPSITPFTVGLPPS 399
>AF036706-3|ABD94091.1| 204|Caenorhabditis elegans Hypothetical
protein T07A9.14 protein.
Length = 204
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 316 YSCPPSSDPRAKPTPSSMPATMP 384
YS PPSS P P PSS + P
Sbjct: 168 YSPPPSSTPTPTPPPSSSSSPTP 190
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 283 TRNEYRPPIEPYSCPPSSDPRAKPTPSSMPATMP 384
TR I PY+ P+S P KPT ++P T P
Sbjct: 767 TRGSSPSIIPPYATAPTSSPDKKPT--TIPPTFP 798
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,352,678
Number of Sequences: 27780
Number of extensions: 271820
Number of successful extensions: 1071
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -