Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b22
(255 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu... 38 3e-04
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 0.91
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 2.1
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 24 3.7
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo... 23 4.9
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 23 4.9
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 23 4.9
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 23 4.9
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 23 4.9
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 23 6.4
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo... 23 6.4
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 23 6.4
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi... 23 6.4
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||... 23 6.4
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 23 6.4
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 23 8.5
>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 85
Score = 37.5 bits (83), Expect = 3e-04
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -2
Query: 185 STLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN 21
ST+ F+R S+F + FF + F++ + S+++ N G W ++K ++ N
Sbjct: 22 STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGLTWDEVKPRFLN 76
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 0.91
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 97 SNVLSKKNVPPATAKANVDVRLKTVRFNVDHTDILKIFSR 216
SN S+K VPP+ + T R D+TD FSR
Sbjct: 455 SNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSR 494
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 2.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 158 RTSTFALAVAGGTFFFERT 102
R ST A A GTFFF R+
Sbjct: 10 RCSTALSAAAAGTFFFRRS 28
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 23.8 bits (49), Expect = 3.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -1
Query: 210 ENFQNVRVVYIKSYCFQTYIYVCFGCCRRNV 118
E ++ R I ++ + +Y+ F CRRN+
Sbjct: 88 EVYKEYRDFMISTFRLNSKVYLTFTACRRNL 118
>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
VI|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 23.4 bits (48), Expect = 4.9
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 158 RTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN*IVNVQ 3
+T F++A AG + F+ F ++ + + N G ++I KY + NVQ
Sbjct: 9 QTGRFSVA-AGPSVRFQAGFLAANRQVRFSSNHGVSLEEINTKYNDFFSNVQ 59
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 242 SSFDEKSDFLEKIFKMSVWSTLNRTVF 162
SSF+ +DFL + FK +++ ++ +F
Sbjct: 6 SSFERGTDFLNRNFKKCLFACISIFIF 32
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 23.4 bits (48), Expect = 4.9
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -2
Query: 236 FDEKSDFLEKIFKMSVWSTLNRTVFKRTSTFALAVAGGTFFFERTFEL 93
+D DFL+ F +S STL + T + VAG R L
Sbjct: 375 WDLTEDFLDLSFSLSRLSTLQAAIIFLTGRPWINVAGNWSILTRAIAL 422
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 23.4 bits (48), Expect = 4.9
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 98 ELVSQSIFENLNKGKLWKDIKH 33
E+ +++I++ LNK ++ K+ KH
Sbjct: 621 EIYNETIYDLLNKAEMLKNPKH 642
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.4 bits (48), Expect = 4.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 210 ENFQNVRVVYIKSYCFQTY 154
+ F V +VYI S+CF Y
Sbjct: 204 KEFSEVDIVYICSFCFCYY 222
>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 23.0 bits (47), Expect = 6.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 160 LKTVRFNVDHTDILKIFSRKSLFSS 234
LK+ FN+DH IL++ S
Sbjct: 90 LKSETFNLDHVKILRVIEYSRFIQS 114
>SPAC23G3.05c |||regulator of G-protein signaling
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 343
Score = 23.0 bits (47), Expect = 6.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 97 SNVLSKKNVPPATAKANVDVRLKTVRFNVDHTDI-LKIFSRKSLF 228
S VL+KKN+PP + N + ++ ++ D+ L I K LF
Sbjct: 8 SEVLTKKNLPPLSL-YNFYIYIRDEENAIEFLDLFLDIMLHKFLF 51
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 23.0 bits (47), Expect = 6.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 245 VSSFDEKSDFLEKIFKMSVWSTLNR 171
++S ++ F+ + SVWSTL R
Sbjct: 765 INSLEKLDQFILPMVSDSVWSTLTR 789
>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 377
Score = 23.0 bits (47), Expect = 6.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 189 HGHFENFLKKITFL 230
HGHFEN L+++ L
Sbjct: 124 HGHFENDLEQLLLL 137
>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 23.0 bits (47), Expect = 6.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 61 LLRFSNID*DTNSNVLSKKNVPPATAKANV 150
LL+ N+D NS LSK++ P+ A V
Sbjct: 37 LLKPDNVDKPANSIPLSKRSTSPSYAPYTV 66
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 88 LNRYLKTSTKENYGRTSSTNM 26
+N Y TS E G SSTN+
Sbjct: 28 VNEYSSTSKFETLGNQSSTNL 48
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 22.6 bits (46), Expect = 8.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 148 RLLWLLPEERSSLKEHLN*CLNRYLKTSTKENYGRTSST 32
+L+WL E SL + L+ TKE++ S++
Sbjct: 278 KLMWLADEIERSLPQELDFTREAKNSIETKEHFAHLSTS 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,076,254
Number of Sequences: 5004
Number of extensions: 18906
Number of successful extensions: 88
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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