Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b17
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 30 0.33
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 28 1.3
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 1.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 27 3.1
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi... 27 3.1
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 26 5.3
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 25 7.1
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.3
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 29.9 bits (64), Expect = 0.33
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 641 DSSKKPQRYNGGRALEDFIKYVSEQATSE 555
D KP+ Y G R+LE I+Y+++++ ++
Sbjct: 224 DDKDKPELYEGDRSLESLIEYINKKSGTQ 252
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 328 ERQCLCTQRM-LFISAFPWTDITHINSEVIFHCFSHYIHP 444
E + +C + +F FP + +N +V+ HC SH P
Sbjct: 594 EHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 282 SVNMMVNECNITIARGTTMSLYPKNAFHICFPLDRYNTH 398
+V + N N++ TT+S+ + IC P+D+ NTH
Sbjct: 543 TVKLEDNTVNLSFVNETTVSV---DKVVICIPMDKLNTH 578
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 364 ISAFPWTDITHINSEV-IFHCFSHYIHPSHKYT-RRSFMESF 483
IS +TD INS + F CF H + PS K T +F+E F
Sbjct: 780 ISRCSFTDF-EINSILNFFFCFLHTVEPSGKLTFELAFLEIF 820
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 325 LAIVMLHSLTIIFTDNRSRITLLDLQNNTDA*TQFHLSLLSVYGA 191
LA++ LH L I++ D + LLD + + T F LS ++ GA
Sbjct: 201 LALIHLHKLGIVYRDLKPENCLLDAEGHI-LLTDFGLSKVAENGA 244
>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 60 QLM*LIYHPQVE---VYQYTTYDNTSDFYKNV 146
Q+M ++ HP + Y YTT DN+ + Y N+
Sbjct: 75 QIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 626 PQRYNGGRALEDFIKYVSEQATSE 555
P RY G R LED ++ + A+ E
Sbjct: 441 PVRYEGDRTLEDLSAFIDKHASFE 464
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 641 DSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKG 531
D + P++YN LE + KY AT+ L+G G
Sbjct: 115 DHKRLPEKYNQMVCLEAYRKYPPVCATAGLRGIQNLG 151
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 81 HPQVEVYQYTTYDNTSDFYKNVYYFLTKRSKMLSYICA 194
H + Y YTT+D+ D + + T + L +IC+
Sbjct: 520 HSIRKTYGYTTHDDLGDDGDDTAHLTTPHYEPLRFICS 557
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 16 NLLVFRTILIINGHLNLCN*FITHKSRFISTQHMTTL 126
+L VF +I +IN H NLC S F+ H TL
Sbjct: 37 SLAVFPSIPLINTHSNLCLFSNFSHSCFLFCTHPDTL 73
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +1
Query: 442 PSHKYTRRSFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSETYLMKSSRARPP 612
PS+ YT + S + H Y +P QP + +V T ++S PP
Sbjct: 980 PSNPYTPIAVASSTVNPAHTYKPHGGSQIVPPPKQPANRVVPLPPTASQRASAYEPP 1036
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,858
Number of Sequences: 5004
Number of extensions: 59661
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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