Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b17
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92970-1|CAB07480.1|  488|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AB072567-1|BAB88817.1|  488|Caenorhabditis elegans ceERp57 protein.    44   1e-04
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U88314-9|AAF99881.1|  408|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    28   6.5  
AF016420-1|AAB65307.2|  310|Caenorhabditis elegans Serpentine re...    28   6.5  
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z92970-1|CAB07480.1|  488|Caenorhabditis elegans Hypothetical
           protein H06O01.1 protein.
          Length = 488

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = -1

Query: 641 DSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQGKE 510
           ++   P  YNGGR ++DF+ ++S+ +T  LKG+ R G  K+  E
Sbjct: 444 NAKSNPIPYNGGREVKDFVSFISKHSTDGLKGFSRDGKKKKKTE 487


>AB072567-1|BAB88817.1|  488|Caenorhabditis elegans ceERp57 protein.
          Length = 488

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = -1

Query: 641 DSSKKPQRYNGGRALEDFIKYVSEQATSELKGWDRKGNAKQGKE 510
           ++   P  YNGGR ++DF+ ++S+ +T  LKG+ R G  K+  E
Sbjct: 444 NAKSNPIPYNGGREVKDFVSFISKHSTDGLKGFSRDGKKKKKTE 487


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 2/122 (1%)
 Frame = +3

Query: 72  LIYHPQVEVYQYTTYDNTSD-FYKNVYYFLTKRSKML-SYICAPYTESNER*NCVYASVL 245
           LIY P + V +  ++ ++    Y + Y F      M    +  PY  SN   NC   S+L
Sbjct: 199 LIYIPVMIVTRKNSHQHSQQHIYLHEYVFFQSCLVMFFKLVTLPYFLSNLEYNCASTSML 258

Query: 246 FCKSSKVILDLLSVNMMVNECNITIARGTTMSLYPKNAFHICFPLDRYNTHKLRSHISLF 425
               + V+   L + +   +CNI        S   +  F + F     + H   S I+  
Sbjct: 259 SMSLADVVTTPLIIQLSYLKCNIHDVICLFFSFDIQKYFRVVFGNVENSVHPNLSRIAFS 318

Query: 426 FT 431
            T
Sbjct: 319 IT 320


>U88314-9|AAF99881.1|  408|Caenorhabditis elegans Hypothetical
           protein C46H11.2 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 406 EVIFHCFSHYIHPSHKYTRRSFMESFESQQHAYNSS 513
           +++F C  HY  P++ Y   +F  SF    H Y  S
Sbjct: 131 DIVFVCNGHYFAPNNPYEESAFEGSF-IHSHDYRHS 165


>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = +2

Query: 311 HYYCKRNDNVSVPKECFSYLLSLGQI*HT*TQKSYFIVFHITFILHTNTHADLSWKVLNH 490
           +Y+C  N  ++ P+ C +   S+         KS  ++F +TF       + L WKV   
Sbjct: 146 YYFC--NFELTFPRNCLTIGCSINACSSRFWTKSKLVIFVLTFSFAALLSSKLLWKVFKK 203

Query: 491 NS 496
           ++
Sbjct: 204 DN 205


>AF016420-1|AAB65307.2|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein11 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 404 QKSYFIVFHITFILHTNTHADLSWKVLN 487
           Q S  IVFH  FILH ++  D S   LN
Sbjct: 280 QTSSAIVFHTNFILHKSSTMDFSASRLN 307


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 78  YHPQVEVYQYTTYDNTSDFYKNVYYFL-TKRSKMLSYIC 191
           YH    +  ++T D  S   KN+Y F+ ++   M  Y C
Sbjct: 270 YHENKRLQSHSTLDTRSKEIKNIYSFIASQNDNMAEYEC 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,235,443
Number of Sequences: 27780
Number of extensions: 332370
Number of successful extensions: 1105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)