Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b16
(285 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 143 5e-36
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 143 5e-36
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 56 1e-09
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 56 1e-09
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 56 1e-09
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 29 0.098
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 24 3.7
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 3.7
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 23 6.5
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 23 6.5
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 143 bits (346), Expect = 5e-36
Identities = 64/73 (87%), Positives = 66/73 (90%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNC 104
+DGRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNC
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNC 110
Query: 103 RKTKCGHTNNLRP 65
RK KCGHTN LRP
Sbjct: 111 RKKKCGHTNQLRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 143 bits (346), Expect = 5e-36
Identities = 64/73 (87%), Positives = 66/73 (90%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNC 104
+DGRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNC
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNC 110
Query: 103 RKTKCGHTNNLRP 65
RK KCGHTN LRP
Sbjct: 111 RKKKCGHTNQLRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 55.6 bits (128), Expect = 1e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 55.6 bits (128), Expect = 1e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 55.6 bits (128), Expect = 1e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 127 EDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 55.6 bits (128), Expect = 1e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 203 EDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 55.6 bits (128), Expect = 1e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 279 EDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 55.6 bits (128), Expect = 1e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 355 EDGRTLSDYNIQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 55.6 bits (128), Expect = 1e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 29.5 bits (63), Expect = 0.098
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 280 DGRTLSDYNIQKESTLHLVLRLRGGT 203
D + Y+++ S LHLVL LRGG+
Sbjct: 52 DDKNAESYHLEGGSVLHLVLALRGGS 77
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 3.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 270 LFQTITSRKNPHFTW 226
LFQT + KNPH W
Sbjct: 117 LFQTDMNEKNPHDLW 131
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 3.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 280 DGRTLSDYNIQKESTLHLVLRLR 212
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 190 GKVQLYLL*VSKPGEVWILSGCYSLK 267
G VQ L + G+VWI+ GC K
Sbjct: 446 GFVQRRLANAACTGKVWIIQGCRDQK 471
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 23.4 bits (48), Expect = 6.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 146 ANHFLTVILHGENAKGRFNCTSSKS 220
A+H +++HG + G FN S+S
Sbjct: 437 ASHSNPIMMHGNDFGGNFNNMQSRS 461
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,141,147
Number of Sequences: 5004
Number of extensions: 20234
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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