Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b16
(285 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 134 7e-33
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 134 7e-33
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 57 2e-09
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 56 5e-09
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 56 5e-09
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 32 0.058
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 30 0.31
Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical pr... 29 0.41
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical... 26 3.8
Z82274-4|CAB05228.1| 429|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z82274-3|CAB05229.1| 435|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z82077-2|CAB04940.1| 722|Caenorhabditis elegans Hypothetical pr... 25 6.6
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 25 6.6
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis... 25 6.6
AL110479-13|CAB60318.1| 204|Caenorhabditis elegans Hypothetical... 25 6.6
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 25 8.7
AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical... 25 8.7
AF040642-9|AAB94950.1| 589|Caenorhabditis elegans Hypothetical ... 25 8.7
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 134 bits (325), Expect = 7e-33
Identities = 60/72 (83%), Positives = 65/72 (90%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNC 104
+DGRTLSDYNIQKESTLHLVLRLRGG IEPSLR LA KYNC+K ICRKCYARL PRA+NC
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKQICRKCYARLPPRASNC 110
Query: 103 RKTKCGHTNNLR 68
RK KCGH++ LR
Sbjct: 111 RKKKCGHSSELR 122
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 134 bits (325), Expect = 7e-33
Identities = 60/72 (83%), Positives = 65/72 (90%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNC 104
+DGRTLSDYNIQKESTLHLVLRLRGG IEPSLR LA KYNC+K ICRKCYARL PRA+NC
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKQICRKCYARLPPRASNC 110
Query: 103 RKTKCGHTNNLR 68
RK KCGH++ LR
Sbjct: 111 RKKKCGHSSELR 122
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 56.8 bits (131), Expect = 2e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGGTI 200
+DGRTLSDYNIQKESTLHLVLRLRGG I
Sbjct: 811 EDGRTLSDYNIQKESTLHLVLRLRGGDI 838
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 127 EDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 203 EDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 279 EDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 355 EDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 431 EDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 507 EDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 583 EDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 659 EDGRTLSDYNIQKESTLHLVLRLRGG 684
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 735 EDGRTLSDYNIQKESTLHLVLRLRGG 760
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 127 EDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 203 EDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 279 EDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 355 EDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 431 EDGRTLSDYNIQKESTLHLVLRLRGG 456
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 51 EDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 127 EDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 203 EDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 279 EDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 355 EDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 431 EDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 507 EDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 583 EDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 659 EDGRTLSDYNIQKESTLHLVLRLRGG 684
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/26 (96%), Positives = 26/26 (100%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGG 206
+DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 735 EDGRTLSDYNIQKESTLHLVLRLRGG 760
Score = 55.6 bits (128), Expect = 5e-09
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLRLRGGTI 200
+DGRTLSDYNIQK+STLHLVLRLRGG I
Sbjct: 811 EDGRTLSDYNIQKQSTLHLVLRLRGGDI 838
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 32.3 bits (70), Expect = 0.058
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 280 DGRTLSDYNIQKESTLHLVLRLRGG 206
D +T +DY + S LHLVL LRGG
Sbjct: 52 DDKTAADYKVLGGSVLHLVLALRGG 76
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 29.9 bits (64), Expect = 0.31
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHL 227
KD RT+SDYNI+ STL L
Sbjct: 135 KDQRTISDYNIKNGSTLRL 153
>Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical
protein C36B1.9 protein.
Length = 674
Score = 29.5 bits (63), Expect = 0.41
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 148 CRKCYARLHPRATNCRKTKCGHT 80
CR CY H + R +CGHT
Sbjct: 63 CRVCYDEYHSSSNQARVLQCGHT 85
>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
protein Y57A10A.31 protein.
Length = 1048
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 163 CEKMICRKCYARLHPRAT 110
C++ CRKC A HP T
Sbjct: 928 CDRSYCRKCLAEPHPDDT 945
>Z82274-4|CAB05228.1| 429|Caenorhabditis elegans Hypothetical
protein JC8.6b protein.
Length = 429
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/62 (25%), Positives = 21/62 (33%)
Frame = -3
Query: 259 YNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHT 80
Y K+ H+ L+ + P R NC K C K Y CR C
Sbjct: 144 YIDMKDHVSHIRLKTKKKVFAPGQR---KPCNCTKSQCLKLYCDCFANGEFCRDCNCKDC 200
Query: 79 NN 74
+N
Sbjct: 201 HN 202
>Z82274-3|CAB05229.1| 435|Caenorhabditis elegans Hypothetical
protein JC8.6a protein.
Length = 435
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/62 (25%), Positives = 21/62 (33%)
Frame = -3
Query: 259 YNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHT 80
Y K+ H+ L+ + P R NC K C K Y CR C
Sbjct: 150 YIDMKDHVSHIRLKTKKKVFAPGQR---KPCNCTKSQCLKLYCDCFANGEFCRDCNCKDC 206
Query: 79 NN 74
+N
Sbjct: 207 HN 208
>Z82077-2|CAB04940.1| 722|Caenorhabditis elegans Hypothetical
protein W09C5.5 protein.
Length = 722
Score = 25.4 bits (53), Expect = 6.6
Identities = 7/21 (33%), Positives = 10/21 (47%)
Frame = -3
Query: 148 CRKCYARLHPRATNCRKTKCG 86
C+ C H R +N + CG
Sbjct: 129 CKNCNGNFHKRCSNAARNNCG 149
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 283 KDGRTLSDYNIQKESTLHLVLR 218
+D ++ DYNIQK ST+ + R
Sbjct: 203 EDHCSIGDYNIQKSSTITMYFR 224
>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug
resistance protein familyprotein 6 protein.
Length = 1396
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 17 TINFPFGYYLILDLLFGSQIVSVS 88
++ PF +L L LLFG ++ S S
Sbjct: 369 SVRLPFALFLPLGLLFGRELFSTS 392
>AL110479-13|CAB60318.1| 204|Caenorhabditis elegans Hypothetical
protein Y105C5B.14 protein.
Length = 204
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 97 SCDSW*HEDEDGHSIYGKSFSHSYTSWRECEGKVQLYLL*VSKPGEVW 240
+C++W ED + ++ ++ R C G QL L+ + +P E+W
Sbjct: 113 TCENWIIEDWNEKVVF-RAVDPRGKYLRACLGSNQLTLVYIPEPTELW 159
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +2
Query: 8 SIVTINFPFGYYLILDLLFGSQIVSVSALCL---ATVGSTRMKTGIAFTANH 154
S TIN P GY L+ + S+ +SV L A T + TG + AN+
Sbjct: 1410 SASTINCPIGYDLVNGMCVNSETLSVIQLAAPGGACEDGTILCTGNSVCANN 1461
>AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical
protein Y47D3A.22 protein.
Length = 765
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 181 LAMKYNCEKMICRKCYARLHPRATNCRKT 95
+A+ +NC C C +L + CRKT
Sbjct: 728 IAVVFNCGHTACVDCADKLKKQCHICRKT 756
>AF040642-9|AAB94950.1| 589|Caenorhabditis elegans Hypothetical
protein C50D2.2 protein.
Length = 589
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 35 GYYLILDLLFGSQIVSVSALCLATVGSTRMKTGIAFT 145
G +IL L +SALC A G+ K G A+T
Sbjct: 60 GPSIILSFLLAGFASLLSALCYAEFGARFPKAGSAYT 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,405,043
Number of Sequences: 27780
Number of extensions: 119129
Number of successful extensions: 334
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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