Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b14
(161 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 20 3.2
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 20 3.2
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 20 3.2
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 19 4.2
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 19 5.6
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 19 5.6
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 19 7.4
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 19 7.4
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 18 9.8
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 18 9.8
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 18 9.8
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 18 9.8
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3
Query: 99 DLEYYNDKIFIYNNFYN 149
D++ ++DKIF+ YN
Sbjct: 68 DIDQWHDKIFVTMLRYN 84
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3
Query: 99 DLEYYNDKIFIYNNFYN 149
D++ ++DKIF+ YN
Sbjct: 68 DIDQWHDKIFVTMLRYN 84
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 19.8 bits (39), Expect = 3.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +3
Query: 99 DLEYYNDKIFIYNNFYN 149
D++ ++DKIF+ YN
Sbjct: 68 DIDQWHDKIFVTMLRYN 84
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 19.4 bits (38), Expect = 4.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3
Query: 123 IFIYNNFYNSF 155
IFIYN+F F
Sbjct: 103 IFIYNSFNTGF 113
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 19.0 bits (37), Expect = 5.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +3
Query: 111 YNDKIFIYNNFYNS 152
YN+ YNN YN+
Sbjct: 94 YNNNYNNYNNNYNT 107
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = +3
Query: 111 YNDKIFIYNNFYNSF 155
YN+ YNN+ N++
Sbjct: 330 YNNNYNNYNNYNNNY 344
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 111 YNDKIFIYNNFYNSFMF 161
YN+K NN YN ++
Sbjct: 100 YNNKYNYNNNNYNKKLY 116
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 18.6 bits (36), Expect = 7.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3
Query: 123 IFIYNNFYNSF 155
+ IYNN NSF
Sbjct: 211 LIIYNNSDNSF 221
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 18.2 bits (35), Expect = 9.8
Identities = 6/11 (54%), Positives = 11/11 (100%)
Frame = +2
Query: 38 SLGLSILVSII 70
+LG+SIL+S++
Sbjct: 266 TLGISILLSLV 276
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 18.2 bits (35), Expect = 9.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +2
Query: 5 IVFLVFSVCEGSLGLSILVSIIRSH 79
I ++ VC G+ L+ ++ +R H
Sbjct: 234 ITRVIPQVCSGNCKLNDILLTVRPH 258
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 18.2 bits (35), Expect = 9.8
Identities = 5/10 (50%), Positives = 9/10 (90%)
Frame = +3
Query: 102 LEYYNDKIFI 131
++ +NDK+FI
Sbjct: 56 MQIWNDKVFI 65
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 18.2 bits (35), Expect = 9.8
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = +2
Query: 5 IVFLVFSVCEGSLGLSILVSIIRSH 79
I ++ VC G+ L+ ++ +R H
Sbjct: 234 ITRVIPQVCSGNCKLNDILLTVRPH 258
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,032
Number of Sequences: 438
Number of extensions: 292
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used: 2637780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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