Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b13
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    29   0.44 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    28   1.0  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   5.5  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.5  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   7.2  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   9.5  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 502 GSQWSMFLLNSFYFEELDLALSSRKNTTPGLDDIPYIMLQNLHVSD 639
           G +W   LL S Y + L L+ S+R+N + G D I Y+ +    +SD
Sbjct: 321 GMRWKTELLASIYRKSLLLSSSARQNRSIG-DIINYMAVDTQKISD 365


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 506 VSGACFYLTLFILKNLTWLCLQERIQPLVLTIFLILCFKICTFLT 640
           +  + FY+T FIL  +    L +++QP  +  F+++ + + T  T
Sbjct: 98  IIASVFYVT-FILFEMPTTLLMKKVQPKRMLAFIVISYSLTTIFT 141


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 424 IESFLEKLAQPSNNNDNISGLFEFNDGSQWSMFLL 528
           I ++ + LA+ +NN  N   +F+ N     S+FLL
Sbjct: 671 INAYAKLLAKDANNKTNFQAIFDNNPKFLDSLFLL 705


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 469 DNISGLFEFNDGSQWSMFLLNSFYFEELDLA 561
           +NI  +FE+ D S     L+  ++F EL++A
Sbjct: 456 NNIWSVFEYKDPSTKLSALIPKYFFSELNIA 486


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 372 SNKIPHSGYWSESIKR*TKTFPTVFLSQFDNNFF 271
           SNK+  S +++ S +   KTF  V +S  DN F+
Sbjct: 332 SNKVSSSDFYTRSFEEIEKTFTFVEIS--DNEFY 363


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 964

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 406  SKNDEWIESFLEKLAQPSNNNDNISGLFEFNDGSQWSMFLLNSFYFE 546
            +KN+      + KL   +  ND+    F F+  +  ++ +LN F FE
Sbjct: 903  AKNEPTAAKPISKLEDDALFNDSAGNAFGFSSKTDSNVEMLNDFDFE 949


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,488
Number of Sequences: 5004
Number of extensions: 41206
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)