Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b13
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964...    29   3.2  
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708...    29   3.2  
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794...    29   4.3  
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701...    29   4.3  
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102...    27   9.9  

>04_04_1451 +
           33695734-33695806,33695946-33696179,33696341-33696434,
           33696532-33696749,33696859-33696992,33697098-33697325,
           33697417-33697845
          Length = 469

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +2

Query: 485 YLNLMTEVSGACFYLTLFILKNLTWLCLQERIQP-----LVLTIFLILCFKICTF 634
           Y N +  V GA  +  L I   +   C+Q RI P       L  F ++CF + TF
Sbjct: 400 YFNEVLGVLGALVFWPLAIYLPVEMYCVQRRISPWTPRWAALQAFSVVCFVVGTF 454


>01_01_0898 +
           7078900-7079079,7080269-7080301,7080480-7080653,
           7080866-7083890,7084253-7084596
          Length = 1251

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 266 LGKKLLSNWLRKTVGKVFVHLLIDSLQYPECGILLEDLRELTL--IEICPKMMSG 424
           +G+  +  W+ +      VH+L D LQ  E  I  EDL  L L   E C + + G
Sbjct: 85  VGEVTIRQWVNQAFSAKLVHVLDDKLQLDESSI--EDLNHLLLPIFESCRQSLVG 137


>01_06_0854 -
           32477994-32478161,32478689-32478826,32479225-32479440,
           32479580-32479656,32481144-32481555,32482248-32482850,
           32482954-32483229
          Length = 629

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 305 VGKVFVHLLIDSLQYPECGILLEDLRE 385
           V  + V+L +D  Q+P+C  LL+D  E
Sbjct: 584 VNTMMVNLAVDEAQFPDCHELLDDFSE 610


>01_06_0853 -
           32468690-32468857,32469398-32469535,32469930-32470145,
           32470280-32470356,32470483-32470549,32471264-32471866,
           32471971-32472258
          Length = 518

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 305 VGKVFVHLLIDSLQYPECGILLEDLRE 385
           V  + V+L +D  Q+P+C  LL+D  E
Sbjct: 473 VNTMMVNLAVDEAQFPDCHELLDDFSE 499


>06_03_1445 -
           30209354-30209396,30209798-30209875,30210220-30210285,
           30212275-30212322,30212408-30212571,30212726-30213581,
           30213673-30213786,30213853-30213996,30214075-30214304,
           30214584-30214724,30214810-30214887,30214972-30215053,
           30215130-30215184,30215284-30215407,30215548-30215641,
           30215718-30215794,30215873-30215982,30216058-30216655
          Length = 1033

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -3

Query: 640 SQKRADFEA*YKEYRQDQGLYSFLKTKPSQVLQNKKS*VETCSTDFRH*IQINQKYYHCY 461
           S+K ADF     E R+ + +++FLK  P QV Q     ++  + D +  I    ++++  
Sbjct: 319 SKKDADFMIDAAETRRYELIHTFLKDNPGQVTQFGLHTLKAATPDRKLFIFFQNEHFNVV 378

Query: 460 Y 458
           Y
Sbjct: 379 Y 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,762
Number of Sequences: 37544
Number of extensions: 204871
Number of successful extensions: 502
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)