Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b13
         (654 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    37   0.021
U60591-1|AAC47275.1| 1239|Drosophila melanogaster kuzbanian prot...    29   5.5  
BT009943-1|AAQ22412.1| 1091|Drosophila melanogaster SD03071p pro...    29   5.5  

>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
           protein.
          Length = 1219

 Score = 37.1 bits (82), Expect = 0.021
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +1

Query: 157 WWNDTCAEAVTKSREALANYRRNMTMDNYIEYXXXXXXXXXXXXLAKKDSWKSLCSSFNR 336
           WWN    +   + + A     R +T+DN ++Y              KK++  S  S+ + 
Sbjct: 287 WWNKHLDQLRKEKQLAWKKLNRTITVDNILDYRRKNAIFRYELKKRKKEASSSFTSTIHP 346

Query: 337 FTPVSRVW 360
            TP S++W
Sbjct: 347 TTPSSKIW 354


>U60591-1|AAC47275.1| 1239|Drosophila melanogaster kuzbanian
           protein.
          Length = 1239

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +1

Query: 427 ESFLEKLAQPSNNNDNISGLFEFNDGSQWSMFLLNSFYFEELDLALSSRKNTTPGLDDIP 606
           E+F++K+A+ +  +  +    E +  S  + F   + YFE+        +N    L D  
Sbjct: 202 ENFIKKIAESTTTSQQLPEYTESSSSSSTTTFPPTTEYFED-----EKERNAEDEL-DFH 255

Query: 607 YIMLQNLHVSD*YEKV 654
            I+ +  HV D YE V
Sbjct: 256 SIIYKESHVEDAYENV 271


>BT009943-1|AAQ22412.1| 1091|Drosophila melanogaster SD03071p
           protein.
          Length = 1091

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +1

Query: 427 ESFLEKLAQPSNNNDNISGLFEFNDGSQWSMFLLNSFYFEELDLALSSRKNTTPGLDDIP 606
           E+F++K+A+ +  +  +    E +  S  + F   + YFE+        +N    L D  
Sbjct: 202 ENFIKKIAESTTTSQQLPEYTESSSSSSTTTFPPTTEYFED-----EKERNAEDEL-DFH 255

Query: 607 YIMLQNLHVSD*YEKV 654
            I+ +  HV D YE V
Sbjct: 256 SIIYKESHVEDAYENV 271


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,655,676
Number of Sequences: 53049
Number of extensions: 375744
Number of successful extensions: 975
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)