Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b13
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77652-13|CAB01120.2| 308|Caenorhabditis elegans Hypothetical p... 29 3.8
Z80789-4|CAC35816.1| 350|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z69788-9|CAC35811.1| 350|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z69788-6|CAD44118.1| 324|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z69788-5|CAD44117.1| 314|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z69788-4|CAA93647.1| 341|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z69788-3|CAA93648.1| 300|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical ... 27 8.8
AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical... 27 8.8
AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8 prot... 27 8.8
>Z77652-13|CAB01120.2| 308|Caenorhabditis elegans Hypothetical
protein C06B3.11 protein.
Length = 308
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 455 LVITMIIFL-VYLNLMTEVSGACFYLTLFILKNLTWLCLQERIQPLVLTIFLILCFKICT 631
L I +I FL + N + V+ Y T+F K L L I PLV + +L L FK CT
Sbjct: 95 LHIVLISFLMISFNRLCAVAFPIAYQTVFGKKWLMILISINWIVPLVASTYL-LTFKQCT 153
Query: 632 F 634
F
Sbjct: 154 F 154
>Z80789-4|CAC35816.1| 350|Caenorhabditis elegans Hypothetical
protein F09A5.4c protein.
Length = 350
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 339 ESIKR*TKTFPTVFLSQFDNNFFPRIYFLIFYIIVHC 229
ES+ R + FPT + ++F+ NF P + ++ ++ HC
Sbjct: 208 ESMSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLF-HC 243
>Z69788-9|CAC35811.1| 350|Caenorhabditis elegans Hypothetical
protein F09A5.4c protein.
Length = 350
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 339 ESIKR*TKTFPTVFLSQFDNNFFPRIYFLIFYIIVHC 229
ES+ R + FPT + ++F+ NF P + ++ ++ HC
Sbjct: 208 ESMSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLF-HC 243
>Z69788-6|CAD44118.1| 324|Caenorhabditis elegans Hypothetical
protein F09A5.4e protein.
Length = 324
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 339 ESIKR*TKTFPTVFLSQFDNNFFPRIYFLIFYIIVHC 229
ES+ R + FPT + ++F+ NF P + ++ ++ HC
Sbjct: 182 ESMSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLF-HC 217
>Z69788-5|CAD44117.1| 314|Caenorhabditis elegans Hypothetical
protein F09A5.4d protein.
Length = 314
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 339 ESIKR*TKTFPTVFLSQFDNNFFPRIYFLIFYIIVHC 229
ES+ R + FPT + ++F+ NF P + ++ ++ HC
Sbjct: 172 ESMSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLF-HC 207
>Z69788-4|CAA93647.1| 341|Caenorhabditis elegans Hypothetical
protein F09A5.4b protein.
Length = 341
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 339 ESIKR*TKTFPTVFLSQFDNNFFPRIYFLIFYIIVHC 229
ES+ R + FPT + ++F+ NF P + ++ ++ HC
Sbjct: 199 ESMSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLF-HC 234
>Z69788-3|CAA93648.1| 300|Caenorhabditis elegans Hypothetical
protein F09A5.4a protein.
Length = 300
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 339 ESIKR*TKTFPTVFLSQFDNNFFPRIYFLIFYIIVHC 229
ES+ R + FPT + ++F+ NF P + ++ ++ HC
Sbjct: 158 ESMSRQEEIFPTKYGNKFNGNFEPAVKKMLSHLF-HC 193
>AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 452 SLVITMIIFLVYLNLMTEVSGACFYLTLFILKNL 553
SL +++ ++L+ LNL EVS C Y+ + I+ +
Sbjct: 300 SLTLSLNLYLI-LNLSLEVSNECKYIPVLIINEI 332
>AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 452 SLVITMIIFLVYLNLMTEVSGACFYLTLFILKNL 553
SL +++ ++L+ LNL EVS C Y+ + I+ +
Sbjct: 300 SLTLSLNLYLI-LNLSLEVSNECKYIPVLIINEI 332
>AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8
protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 452 SLVITMIIFLVYLNLMTEVSGACFYLTLFILKNL 553
SL +++ ++L+ LNL EVS C Y+ + I+ +
Sbjct: 300 SLTLSLNLYLI-LNLSLEVSNECKYIPVLIINEI 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,299,184
Number of Sequences: 27780
Number of extensions: 214664
Number of successful extensions: 478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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