Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b10
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   2.1  
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    27   2.8  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   8.5  

>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 188 KTNVIEYIKFFFFSILCFNYLC*ILSL 108
           K ++  YI FFF+S LC  YL   +SL
Sbjct: 76  KFSIYIYIYFFFYSFLCSPYLFKYISL 102


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 308 FLYLYFKRFMDYIEQMCKSYIPRFFYA 388
           FL++Y+ R+  Y   M   + P ++YA
Sbjct: 398 FLFVYYMRYCTYKSLMRTQFAPHYYYA 424


>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 383 YASSCIQFVTGGSASSVDSEHDVNSYT 463
           Y   CI F+ GG A+  D  H  N  T
Sbjct: 97  YKEFCIMFIAGGHAAMFDLPHATNLQT 123


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 453 ILIPHPRHLFLGSLANTCFVSNLLIEKVVKL*RFEPYLDFYLFHFALCITI 605
           ++I      F   L     V+N +I     + R  PY DFY + F   ++I
Sbjct: 228 VVIGFKAKFFAAVLVLILSVANFIINSFWSVPRESPYRDFYRYDFFQTLSI 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,032
Number of Sequences: 5004
Number of extensions: 53831
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)