Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b09
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 277 1e-75
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 50 2e-07
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 46 4e-06
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.27
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 30 0.35
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 4.3
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 5.7
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 7.6
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 7.6
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 25 10.0
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 10.0
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 10.0
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 277 bits (679), Expect = 1e-75
Identities = 133/183 (72%), Positives = 157/183 (85%)
Frame = -2
Query: 653 RKELPPPRKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLD 474
++ + +K SITSVQA+YVPADDLTDPAPATTFAHLDATTVLSR+I+ELGIYPAVDPLD
Sbjct: 339 QERITTTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLD 398
Query: 473 STSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR 294
S SR+MDP I+G EHYN+A VQ++LQ+YKSLQDIIAILGMDELSE DKLTV RARK+QR
Sbjct: 399 SKSRMMDPRILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQR 458
Query: 293 FLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKAET 114
FLSQPF VAEVFTG G+LV L++TI+ F +IL G +D LPE AFYMVG I++ V KAE
Sbjct: 459 FLSQPFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVGSIDDAVKKAEK 518
Query: 113 LAK 105
+A+
Sbjct: 519 IAQ 521
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = -1
Query: 675 ATDMGTMQERITTTKKG 625
ATDMG MQERITTTKKG
Sbjct: 332 ATDMGAMQERITTTKKG 348
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 50.4 bits (115), Expect = 2e-07
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Frame = -2
Query: 632 RKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMD 453
R SIT + + +P DD+T P P T + + R + IYP ++ L S SR+M
Sbjct: 322 RNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMK 381
Query: 452 PNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FL 288
I +H +V+ + + + + +++G + LS+ED+L + K ++ F+
Sbjct: 382 SAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFI 441
Query: 287 SQ 282
SQ
Sbjct: 442 SQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 46.4 bits (105), Expect = 4e-06
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Frame = -2
Query: 638 PPRKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 459
P R+ +++ V A+ P D +DP + T + L + +A+ +P+++ S S+
Sbjct: 406 PDREGTVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYSKY 465
Query: 458 MDPNIIGAEH----YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR 294
++ E +N R +++I+Q S+ +II ++G LSE DK+T+ A I+
Sbjct: 466 INALQPWYEERVPGFNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGIIKN 525
Query: 293 -FLSQ 282
FL Q
Sbjct: 526 DFLQQ 530
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.27
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -2
Query: 611 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 438
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 437 AEHYNVARGVQKILQDYKSL 378
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 29.9 bits (64), Expect = 0.35
Identities = 28/115 (24%), Positives = 47/115 (40%)
Frame = -2
Query: 623 SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI 444
S+T++ I D++ P + D L + GI PA++ S SR+
Sbjct: 348 SLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRVGSAAQ 407
Query: 443 IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQP 279
+ A VA ++ L Y+ + A G D L + T+ R ++ L QP
Sbjct: 408 VKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQP 459
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 480 RIHSWVDTQFSNGSRKYSGSIQVSK 554
R+ S DT F N KY ++Q+SK
Sbjct: 1331 RVESSSDTVFENTDLKYDNNVQMSK 1355
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 176 LPEVAFYMVGPIEEVVAKAETLAKNA*TGQYCVIILKSCRVIY*K 42
LP + +Y+ GP + V AK+ + N +C+ +++S R ++ K
Sbjct: 373 LPPIDYYLNGPYDNVEAKSALM--NI-YSSHCITLIESVRYMHLK 414
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 226 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 351
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 7.6
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3
Query: 579 QVISWYINSLHRCDG 623
+ +SW++N+LH C G
Sbjct: 265 EFLSWFLNTLHNCLG 279
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 648 RITTTKKGFHHICAGYLCTS 589
R TTT +G H IC YL TS
Sbjct: 92 RFTTTNEGTHRIC--YLSTS 109
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -2
Query: 485 DPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILG 354
+ +D+T + +P I E V + Q ++ + + ++DI++ LG
Sbjct: 371 EEIDATIQTYNPQNIDLEDEAVEKEWQDLVAEEQKVEDIVSTLG 414
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 501 TQFSNGSRKYSGSIQVSKSGGWSRISQVISWYINSLHRCDG 623
TQ SR S + S + ++WY++SLHR G
Sbjct: 43 TQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITG 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,544
Number of Sequences: 5004
Number of extensions: 60404
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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