Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b09
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 53 2e-07
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 52 6e-07
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 51 7e-07
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 51 1e-06
04_03_1003 - 21631188-21631274,21631939-21632043,21632171-216322... 33 0.21
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 31 1.1
07_03_1201 + 24791588-24792619 30 1.9
11_06_0759 + 27008772-27009571,27010457-27010576,27011683-270119... 29 2.6
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126... 29 3.4
03_06_0672 + 35443883-35444051,35444151-35444482 29 3.4
06_01_0599 - 4327671-4330034 29 4.5
02_01_0150 + 1063732-1064214,1064290-1064355,1064721-1064803,106... 29 4.5
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 28 5.9
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 28 5.9
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 28 7.8
07_03_0504 - 18842442-18844668,18845418-18845428 28 7.8
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 28 7.8
01_06_1147 + 34892415-34893702,34894051-34894676 28 7.8
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 28 7.8
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 53.2 bits (122), Expect = 2e-07
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Frame = -2
Query: 632 RKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMD 453
RK SIT + + +P DD+T P P T + + R + IYP ++ L S SR+M
Sbjct: 331 RKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMK 390
Query: 452 PNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FL 288
I +H +V+ + K +Q + A++G + LS ED L + K +R F+
Sbjct: 391 SAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV 450
Query: 287 SQ 282
+Q
Sbjct: 451 TQ 452
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 51.6 bits (118), Expect = 6e-07
Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Frame = -2
Query: 638 PPRKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 459
P R S+T V A+ P D +DP + T + + L + +A+ +P+V+ L S S+
Sbjct: 404 PKRDGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 463
Query: 458 MDPNIIGAEHY--------NVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARK 303
HY ++ +++LQ L +I+ ++G D L+E DK+T+ A+
Sbjct: 464 SKIPTALEPHYEREDPDFIDIRTKAREVLQREDDLNEIVQLVGKDALAESDKITLETAKL 523
Query: 302 IQR-FLSQ 282
++ +L+Q
Sbjct: 524 LREDYLAQ 531
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 51.2 bits (117), Expect = 7e-07
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Frame = -2
Query: 632 RKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMD 453
R SIT + + +P DD+T P P T + + R + IYP ++ L S SR+M
Sbjct: 361 RSGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMK 420
Query: 452 PNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FL 288
I +H +V+ + K +Q + A++G + LS ED L + K +R F+
Sbjct: 421 SAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFV 480
Query: 287 SQ 282
+Q
Sbjct: 481 TQ 482
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 50.8 bits (116), Expect = 1e-06
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 6/125 (4%)
Frame = -2
Query: 638 PPRKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 459
P R S+T V A+ P D +DP + T + + L + +A+ +P+V+ L S S+
Sbjct: 418 PDRTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 477
Query: 458 MDP-----NIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR 294
+ ++ +++LQ L +I+ ++G D L+E DK+T+ A+ ++
Sbjct: 478 SKALESFYEKFDQDFIDIRTKAREVLQREDDLNEIVQLVGKDALAESDKITLETAKLLRE 537
Query: 293 -FLSQ 282
+L+Q
Sbjct: 538 DYLAQ 542
>04_03_1003 -
21631188-21631274,21631939-21632043,21632171-21632248,
21632337-21632411,21632908-21632994,21633091-21633158,
21633478-21633565,21633684-21633784,21633831-21633990,
21635088-21635246,21635351-21635527
Length = 394
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 447 IGVHDTGC*VKRIHSWVDTQFSNGSRKYSGSIQVSKSGG---WSRISQVISWYINSL 608
+G HD+G K I W +NGS ++ ++ + G +SR +++W +N+L
Sbjct: 115 LGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGNITFSRFRFLVAWLVNAL 171
>10_08_0444 +
17971724-17971797,17972119-17972176,17972613-17972708,
17972974-17973000,17973019-17973075,17973604-17973687,
17974304-17974384,17974928-17975071,17975218-17975309,
17975998-17976079,17976818-17977000,17977360-17977438,
17977555-17977613,17978162-17978290,17979188-17979367,
17980312-17980446,17980528-17980602,17980890-17980947,
17981035-17981282,17981594-17981733,17981961-17982132,
17982797-17982887,17983099-17983221,17984951-17985032,
17985715-17985835,17985886-17985915,17986427-17986549
Length = 940
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 564 WSRISQVISWYINSLHRCDGXLSW 635
W R V Y+ SL+RCD L W
Sbjct: 421 WPRFKTVFDMYLQSLYRCDTKLLW 444
>07_03_1201 + 24791588-24792619
Length = 343
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = -2
Query: 383 SLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPL--EETIKG 210
S D + +L ++L D R + RF+ +PF AE G +V L E +K
Sbjct: 227 SRPDRVLLLRYEDLLR-DGAAGEHVRAMARFMGRPFSAAEEAAGAVASVVELCSFERMKA 285
Query: 209 FS---KILAGDYDHLPEVAFYMVG 147
+ AG Y +P AF+ G
Sbjct: 286 LEVNRRGTAGSYKSMPRDAFFRKG 309
>11_06_0759 +
27008772-27009571,27010457-27010576,27011683-27011957,
27012516-27013783
Length = 820
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +3
Query: 204 GESFDGFLKWY*FTRMSSEHLSYLER------L*EEPLNFTCTCHCQLVFFR*LVHTQNS 365
G +FD + W F + L YLE + P TC V R LVH Q+S
Sbjct: 704 GFTFDCRVPWVTFKEEAMPSLQYLELKLYAGPAGKIPSGITCLPCLTKVILRYLVHYQSS 763
Query: 366 NNVLQGFVVLKNFLNSTCNIVVLSSNNIGVHD 461
+V ++ + N++VLS N G H+
Sbjct: 764 ASVQDTISKMRKESSEHPNMIVLSQN--GEHE 793
>11_01_0151 -
1263237-1263406,1267405-1267646,1267681-1267781,
1268010-1268780
Length = 427
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 247 ACPVNTSATWKGCERNL*ILRARATVNLSSSDNSSI 354
A P+ +S TWKG E L +++ R + + DN I
Sbjct: 42 AFPLVSSPTWKGIEHGLELVKQRIIWRVGNGDNIKI 77
>03_06_0672 + 35443883-35444051,35444151-35444482
Length = 166
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 422 VARGVQKILQDYKSLQDIIAILGMDELSEEDK 327
VA GVQ++++ KSL I A+ +E EE++
Sbjct: 84 VATGVQRLIKGIKSLSQIFAMYDDEEEDEEER 115
>06_01_0599 - 4327671-4330034
Length = 787
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = -2
Query: 644 LPPPRKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTS 465
+PPPR+ ++ A + L A ++T HLD +S A G YP +DP +TS
Sbjct: 1 MPPPRRRPPSAADAAALRRPYLRLVALSSTLRHLDQILAVSLA---SGHYP-LDPAPATS 56
Query: 464 RIM 456
++
Sbjct: 57 LLL 59
>02_01_0150 +
1063732-1064214,1064290-1064355,1064721-1064803,
1065100-1065155,1065247-1066061
Length = 500
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/74 (28%), Positives = 40/74 (54%)
Frame = -2
Query: 407 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPL 228
+K+L+ ++Q+ ++ ++ E + A + + R LS F+ ++ AG LVP+
Sbjct: 181 KKMLKHRYAMQEAKHLVCDKNVTVEQSIHTALSSQFVR-LSSYFK--KIHMSGAGNLVPM 237
Query: 227 EETIKGFSKILAGD 186
E +K SKI AG+
Sbjct: 238 EIALKVASKIAAGE 251
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -2
Query: 581 LTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPL--DSTSRIMDPNIIGAEHYNVARGV 408
L + A T LDA+ L +A I + PL D S + PN GAE N+AR +
Sbjct: 514 LLESAEDTALDILDASDELGLFLARAVIDDVLAPLNLDEISGKLPPNCSGAETLNMARSL 573
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 247 ACPVNTSATWKGCERNL*ILR 309
A P NTS TWKG E L +L+
Sbjct: 440 AFPSNTSPTWKGIEHGLELLK 460
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 504 GYLPSCGSS*LNIPYHGPQYYWS*ALQCCTWSSE 403
GYL S + + G YY AL CCTWSS+
Sbjct: 361 GYLRVFDFSKEQLIFGGKSYYG--ALLCCTWSSD 392
>07_03_0504 - 18842442-18844668,18845418-18845428
Length = 745
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -2
Query: 383 SLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVP 231
S +++++++ MD+ S +TV K+ FL A H+G +P
Sbjct: 310 SARNLVSLVQMDDDSNVSNMTVTIQNKVHEFLQFEAHEASFLEVHSGDDIP 360
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 215 KGFSKILAGD--YDHLPEVAFYMVGPIEEVVAK 123
KG +++AG + H FYM+ P EEVV K
Sbjct: 163 KGTERLVAGAQLFGHSTRQPFYMIQPSEEVVQK 195
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 611 VQAIYVPADDLTDPAPATTFAHLDATTVLS 522
VQ + +PA L P P+ T LDA VLS
Sbjct: 71 VQTLRLPAVGLFGPLPSDTLGKLDALEVLS 100
>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -3
Query: 523 LEPLLNWVSTQLWI-----LLTQHPVSWTPILLELSTTMLHVEFRKFFRTTN 383
L P W+S ++I ++ V+W ++L + ML++ FRK++ +T+
Sbjct: 1077 LLPFFVWMSVSMYITVIGVVIMTCQVAWPSVVLVVPLLMLNLWFRKYYISTS 1128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,454,477
Number of Sequences: 37544
Number of extensions: 394039
Number of successful extensions: 1133
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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