Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b09
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   308   2e-84
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    51   9e-07
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    48   5e-06
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    48   6e-06
U23513-1|ABD94110.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    28   5.3  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  308 bits (757), Expect = 2e-84
 Identities = 149/183 (81%), Positives = 163/183 (89%)
 Frame = -2

Query: 653 RKELPPPRKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLD 474
           ++ +   +K SITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR IAEL IYPAVDPLD
Sbjct: 352 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLD 411

Query: 473 STSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR 294
           STSRIMDPN++G  HY++ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV+RARKIQR
Sbjct: 412 STSRIMDPNVVGQNHYDIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQR 471

Query: 293 FLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKAET 114
           FLSQPFQVAEVFTGH GK V LEETI+GF+ IL G+ DHLPEVAFYM G I++V  KAE 
Sbjct: 472 FLSQPFQVAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAFYMQGGIDDVFKKAEE 531

Query: 113 LAK 105
           LAK
Sbjct: 532 LAK 534



 Score = 37.1 bits (82), Expect = 0.011
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = -1

Query: 675 ATDMGTMQERITTTKKG 625
           ATDMG+MQERITTTKKG
Sbjct: 345 ATDMGSMQERITTTKKG 361


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
 Frame = -2

Query: 638 PPRKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 459
           P R+ S+T V A+  P  D  DP  + T   +     L + +A+   +P+++ L S S  
Sbjct: 387 PEREGSVTIVGAVSPPGGDFADPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSEY 446

Query: 458 M-------DPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKI 300
           M       + N    E  ++    ++ILQ+ + L +I+ ++G   L+E DK+T+    ++
Sbjct: 447 MRALEEFYEKNY--PEFVSLRTKCKEILQEEEDLSEIVQLVGKASLAESDKVTL----EV 500

Query: 299 QRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYD 180
            + +   F     +T +  +  P  +T+ G  K + G YD
Sbjct: 501 AKIIKDDFLQQNGYTKY-DRFCPFYKTV-GMLKNMIGFYD 538


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
 Frame = -2

Query: 632 RKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMD 453
           R  SIT +  + +P DD+T P P  T    +    + R +    IYP ++ L S SR+M 
Sbjct: 324 RDGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRLMK 383

Query: 452 PNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FL 288
             I       +H +V+  +       K +Q + A++G + LS +D L +    K ++ F+
Sbjct: 384 SAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSDDLLYLEFLTKFEKNFI 443

Query: 287 SQ 282
           +Q
Sbjct: 444 TQ 445


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
 Frame = -2

Query: 632 RKXSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM- 456
           R+ SIT +  + +P +D+T P P  T    +    + + + +  IYP +D L S SR+M 
Sbjct: 336 REGSITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSRLMK 395

Query: 455 ---DPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FL 288
                 +   +H +++  +       K +Q + A++G++ LS +D L +    K ++ F+
Sbjct: 396 SAVGEGMTREDHSDLSNQLYACYAMGKDVQAMKAVVGVEALSPDDLLYLEFLAKFEKNFI 455

Query: 287 SQ 282
           +Q
Sbjct: 456 AQ 457


>U23513-1|ABD94110.1|  294|Caenorhabditis elegans Hypothetical
           protein D2021.4a protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -2

Query: 467 SRIMDPNIIGAEHYN-VARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRF 291
           ++I D N+I + HYN V+ G  + L D K ++ +  +   D   E  K+ +A  +   +F
Sbjct: 56  NKIKDENVIFSMHYNFVSAGDPRKLIDIK-IEKVGNVYTADVYHENKKIGLAHIKTDSKF 114

Query: 290 LSQ-PF 276
           L + PF
Sbjct: 115 LRKIPF 120


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 520 EPLLNWVSTQLWILLTQHPVSWTPI-LLELSTTM-LHVEFRK 401
           + L N++  Q W++L  HP  +TP+   EL+  + L  EFRK
Sbjct: 20  QTLHNYIGEQ-WLMLFSHPADFTPVCTTELAELVKLAPEFRK 60


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 405 ENSSGLQIPAGHYCYFG 355
           ENS+G +  AGH+C+ G
Sbjct: 424 ENSNGTECSAGHWCHIG 440


>Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical
           protein T22H6.4 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 545 LDATTVLSRAIAELGIYPAVDPLDSTSRIMD 453
           +D     ++  A LGIYPA+DP+ +   I D
Sbjct: 275 IDVGVAANKTAAFLGIYPALDPMIAIFLIKD 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,217
Number of Sequences: 27780
Number of extensions: 349788
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)