Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b08
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_02_0011 - 8513471-8513673,8513815-8513869 29 1.8
09_04_0350 + 16899076-16900164 28 3.1
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 27 4.1
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802 27 4.1
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858... 27 5.5
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333... 27 5.5
05_04_0258 + 19490256-19491569 27 7.2
12_02_0629 - 21360831-21361310,21361391-21361663,21362212-213624... 26 9.5
08_02_0337 - 15903990-15904249,15904318-15904441 26 9.5
07_03_0388 + 17550034-17550267 26 9.5
04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888 26 9.5
03_02_0862 + 11886576-11886624,11886789-11887354 26 9.5
>04_02_0011 - 8513471-8513673,8513815-8513869
Length = 85
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 186 APCTTIGSTCLDCTTKQVCTKVGGIQRACLDPT-LPYCNLGECSATP 49
AP T + C+D T K +C+ + C L YCN C+ +P
Sbjct: 33 APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNF--CANSP 77
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/41 (51%), Positives = 22/41 (53%)
Frame = +1
Query: 178 ARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDS 300
AR P V SG + WR R D A AS TAG GGR R S
Sbjct: 71 ARRPWLV-SSGAEAWRR-RGDAASA-ASATAGGAGGRSRRS 108
>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 140 LVVQSRQVLPMVVQGAHCGYQGADAIHGGIQGLT 241
L ++ RQ P+V+ G C ++G D I GI G T
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGDKI--GIVGRT 1265
>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
Length = 320
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 181 RSPLRVPGSGCDPWRYPRVDCAIVPASPTAG 273
R P ++P P+ +PR D A+ P+SP G
Sbjct: 40 RQPAKIPA----PFVWPRADVALPPSSPPTG 66
>11_03_0107 +
10084234-10084348,10084830-10084834,10085351-10085803,
10086143-10086267,10087282-10087345,10087452-10087508,
10088475-10088485,10089923-10090802
Length = 569
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -3
Query: 150 CTTKQVCTKVGGIQRA--CLDPTL--PYCNLGECSATPAEGCEPASGASVA 10
C+T + T +G I A P+L P CN +A + CEP GA+++
Sbjct: 31 CSTVEQATGLGYIVLALQAYTPSLHPPPCNPAATTAAASTTCEPVRGANLS 81
>01_06_1227 +
35531840-35532516,35532665-35532836,35533158-35533357,
35533467-35533622,35536878-35537235,35537407-35537418
Length = 524
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 289 TCHRWCRRLGRLEQWRSQPLDTSMDR 212
TC R RR ++WR QP D SM R
Sbjct: 201 TCMRNGRRDDTYQKWRWQPKDCSMPR 226
>05_04_0258 + 19490256-19491569
Length = 437
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = -3
Query: 189 WAPCTT--IGSTC--LDCTTKQV-CTKVGGIQRACLDPTLPYCNLGECSATP 49
W C T + S+ + C +K TK GG +C P C G CS P
Sbjct: 73 WVDCDTGYVSSSYARVPCGSKPCRLTKTGGCFNSCFGAPSPACLNGTCSGFP 124
>12_02_0629 -
21360831-21361310,21361391-21361663,21362212-21362488,
21362590-21362735,21363207-21363416
Length = 461
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 11 ATDAPEAGSHPSAGVA-EHSPRLQ*GRVGSRHALCIPP 121
A AP + +AGVA H PR R+ RH +PP
Sbjct: 32 AAAAPGLDAVAAAGVAGAHGPRRAGARLRERHGAPLPP 69
>08_02_0337 - 15903990-15904249,15904318-15904441
Length = 127
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 69 RGCSKEESGPDTPSVYLL 122
RGC +EE G ++PS+ LL
Sbjct: 108 RGCMREEPGGNSPSLVLL 125
>07_03_0388 + 17550034-17550267
Length = 77
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 168 RWWCKEPTAGT--RERMRSMEVSKG*LRHCSSLPNRRHHRWQVEG 296
RW + AG+ RER + EVS+ R ++ P R H R + G
Sbjct: 11 RWRLGQVDAGSEGRERQQCGEVSRPGYRRVATAPLRCHRRESLSG 55
>04_03_0800 - 19820886-19821421,19822476-19822563,19822871-19822888
Length = 213
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = -3
Query: 132 CTKVGGIQRACLDPTLPYCNLGECSATPAEGCEPASGASVAP 7
CT GG C P +P C G CS + C GAS P
Sbjct: 137 CTYCGGHGGGCNKPAVPPC-AGGCSISDGGAC----GASCKP 173
>03_02_0862 + 11886576-11886624,11886789-11887354
Length = 204
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +1
Query: 142 GSAI*ASTTDGGARSPLR--VPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDSRS 306
G A + T GG +P R VP +G D V + T G R+RD R+
Sbjct: 118 GPAAGSGTWQGGGGTPPRSGVPAAGSDSRMVRVVMAGVAGDGRTTRAEGRRMRDGRT 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,371,710
Number of Sequences: 37544
Number of extensions: 247199
Number of successful extensions: 821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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