Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b07
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78544-1|CAB01761.1|  218|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z68227-1|CAA92507.1|  320|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL021487-13|CAA16356.3|  326|Caenorhabditis elegans Hypothetical...    28   5.9  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z78544-1|CAB01761.1|  218|Caenorhabditis elegans Hypothetical
           protein K04G11.1 protein.
          Length = 218

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 68  KNELCDFHKNFMVFLTYFTATIFKRSRDVCATLC---LSPTTTTYHFMSLYIR 217
           KN +C F   +M FLT  T  ++++ + +   L    L P  T   F+ + IR
Sbjct: 107 KNFVCKFDIEYMCFLTLKTTNLYQKLQGIYIELLLLPLLPLATVLSFLFMQIR 159


>U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical
           protein F18A1.1 protein.
          Length = 1075

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 181 HYHLPLYVTIYQKLGNA*VQFNQNFNWKH 267
           H  LP YV +  KLG+  V+ + N  W++
Sbjct: 181 HNFLPKYVKLIDKLGSFAVRIDHNCRWRY 209


>Z68227-1|CAA92507.1|  320|Caenorhabditis elegans Hypothetical
           protein F49C12.2 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 154 HISGSFKNCGCKICQKNHEVFMEVTKFIFNVKYVF 50
           H  G+F N G KICQ N E+  ++   +   + +F
Sbjct: 240 HRGGAFDNKGVKICQINTEIHKDLDNGVTGEQNMF 274


>AL021487-13|CAA16356.3|  326|Caenorhabditis elegans Hypothetical
           protein Y45F10B.5 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 27  LIQIFFALKTYFTLKMNFVTSIKTSW 104
           L  IFF L  Y T+++ F T I TSW
Sbjct: 76  LTSIFFMLSDYITIRLPF-TGILTSW 100


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 238 QFNQNFNWKHP 270
           +FNQN NWKHP
Sbjct: 262 RFNQNQNWKHP 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,542,061
Number of Sequences: 27780
Number of extensions: 242326
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)