Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b07
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -1

Query: 163 SGTHISGSFKNCGCKICQKNHEVFMEVTKFIFNVKYVFKAKNI 35
           + + I   FK+   K C++   +FM +       K ++K  N+
Sbjct: 754 TASQIPQGFKDLVQKKCEERGILFMPIPNRYREAKQIYKVGNV 796


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 486 FRYIASYVCAIPKT 445
           F +I S VC++P+T
Sbjct: 159 FAWIGSVVCSLPQT 172


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +1

Query: 244 NQNFNWKH 267
           N+N+NW+H
Sbjct: 185 NENYNWEH 192


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 539 VLFQQCFCAFNFCWRLYFLDI 477
           ++F  CF  FN  + + +L I
Sbjct: 410 IVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 539 VLFQQCFCAFNFCWRLYFLDI 477
           ++F  CF  FN  + + +L I
Sbjct: 410 IVFPVCFVCFNLMYWIIYLHI 430


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 528 TMFLCI*LLLATVLFRYIASYVCAIP 451
           T+F  + L+L TVL  ++   V  +P
Sbjct: 233 TLFYTVNLILPTVLISFLCVLVFYLP 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,421
Number of Sequences: 438
Number of extensions: 2787
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)