Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11b05
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 36 0.011
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 36 0.014
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.099
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746... 31 0.40
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 30 0.69
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 0.69
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 0.92
01_01_0082 + 625198-625719 28 2.8
04_03_0904 + 20717005-20718087 27 3.7
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 3.7
09_02_0417 - 8915604-8916779,8916863-8917270 27 4.9
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 27 6.5
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 6.5
02_05_1252 + 35261135-35261935 27 6.5
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 26 8.6
01_06_0390 - 28938485-28938751,28939924-28941282 26 8.6
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077 26 8.6
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 26 8.6
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 35.9 bits (79), Expect = 0.011
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = -2
Query: 328 KFFMIFVLALLA--MANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI 155
K ++F L L A +A+A+ +N +E P +PP P+ + Y+P
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPP----PSPDYYDPP 66
Query: 154 DNGAYYVDPPQGRPYFKPTPFPGARGG 74
+ YY DPP Y+ P P P GG
Sbjct: 67 HSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 35.5 bits (78), Expect = 0.014
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -2
Query: 274 PVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFK 104
P + + Y P + P V PP Y P +G P N + Y +PP GRP
Sbjct: 381 PPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSG 439
Query: 103 PTPFPGARG 77
P P GA G
Sbjct: 440 PPPSYGAGG 448
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.099
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -2
Query: 235 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 86
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>05_05_0219 +
23371561-23371680,23371799-23372207,23374520-23374635,
23375385-23375855
Length = 371
Score = 30.7 bits (66), Expect = 0.40
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Frame = -2
Query: 328 KFFMIFVLALLAMANAQDPVKVVENADSGNGYEPIDNRPYIV----NPPKDYNPNGNGYE 161
+F + V+ LLA+A P A G P + P K+ + NG
Sbjct: 5 RFAAVVVVLLLALALIPGPAAAAGRALQGEKARPSEAAPAPTVAAGGSHKESAKSSNGQN 64
Query: 160 PIDNGAYYVDPPQGRPYFKPTPFP 89
P+ ++ PP +P TP P
Sbjct: 65 PVTKETHHQTPPPAKPPKDQTPPP 88
Score = 26.6 bits (56), Expect = 6.5
Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Frame = -2
Query: 259 ENADSGNGYEPIDNR-----PYIVNPPKDYNP---------NGNGYEPIDNGAYYVDPPQ 122
E+A S NG P+ P PPKD P G + +N + V P
Sbjct: 55 ESAKSSNGQNPVTKETHHQTPPPAKPPKDQTPPPPPAVSESKGQKGDAGNNSGHPVPPTD 114
Query: 121 GRPYFKPTPFPGARGGK 71
P PG GGK
Sbjct: 115 AHKTSPPPEGPGPTGGK 131
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 29.9 bits (64), Expect = 0.69
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = -2
Query: 286 NAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 110
+AQ P V DS GY + RP P Y P G + GA PP G P+
Sbjct: 762 HAQGPYGVPPGGDSRPGYSQPEQRPAYSQP---YPPYGAPPQQPPYGAPSQQPPYGAPH 817
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 0.69
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 217 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 101
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -2
Query: 244 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 92
G Y+P R PP+ P Y P G Y PQG+PY P P+
Sbjct: 247 GETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 0.92
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = -2
Query: 229 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 89
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>01_01_0082 + 625198-625719
Length = 173
Score = 27.9 bits (59), Expect = 2.8
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -2
Query: 244 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARGG 74
G GY P + NP YNP +G+ N Y+ PP G Y + F P A G
Sbjct: 100 GGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAAG 152
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 202 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 89
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -1
Query: 149 RCILRGPSPR-PTLLQAYPFPWCSRW 75
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.1 bits (57), Expect = 4.9
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 214 PYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 95
PY +N P P+ Y P Y PPQ PY P P
Sbjct: 42 PYAMNFPFPPFPH---YPPYTQNLQYAVPPQYAPYTLPPP 78
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = -2
Query: 235 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 101
+ P D P + P +++ G G DPP GRP P
Sbjct: 474 FAPFDGPPVDILPNREFMLYGRSANSPPYGGPPNDPPYGRPAIDP 518
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 176 WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 57
W RLR R +L+ P+P P + + RW K +L
Sbjct: 836 WDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875
>02_05_1252 + 35261135-35261935
Length = 266
Score = 26.6 bits (56), Expect = 6.5
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = -2
Query: 283 AQDPVKVVENADSGNGYE--PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 110
A PV V+ + + YE P++ PP G EP+ G + + P P
Sbjct: 186 AAGPVMVIASTFANATYERLPLEEEEEGSGPPMP-----GGAEPLMAGGHGIADPSALPM 240
Query: 109 FKPTPFPGARGG 74
F P G GG
Sbjct: 241 FNLPPSNGLGGG 252
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -2
Query: 202 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARG 77
NP + NG + +NG YY P Y P PFP G
Sbjct: 357 NPANKQLRSDNGSQ-WNNGMYYAASPFYSGYGYPAPFPADPG 397
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 164 RTYRQRCILRGPSPRPTLLQAYPFPW 87
+ + RC R PS RPT Q P+
Sbjct: 234 KNFLSRCFTRNPSDRPTAAQLLEHPF 259
>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
Length = 247
Score = 26.2 bits (55), Expect = 8.6
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 38 YFVINFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFVAVSIRVVIFGRINDVRA 217
YF I F+ + + PT + + + + L V+C+ ++ V +R +I+G DV+A
Sbjct: 80 YFFIYFIGHGVFPTVHSLMKSKKDFPKVLLISSVLCS-LNYAVTTLLRYLIYG--EDVQA 136
Query: 218 VV 223
V
Sbjct: 137 QV 138
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 26.2 bits (55), Expect = 8.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 244 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT-PFP 89
G+G +N+ Y N PK +P NG Y P G+P++ P P P
Sbjct: 113 GHGNPNKNNQAYHRNGPKRRSPAANGTPSYPAAMPYHQHP-GQPFYYPVIPSP 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,210,733
Number of Sequences: 37544
Number of extensions: 241391
Number of successful extensions: 700
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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