Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b03
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376...    29   3.5  
01_02_0117 - 11262246-11262477,11264094-11264212                       29   3.5  

>03_05_0832 -
           28037047-28037315,28037428-28037530,28037664-28037695,
           28037788-28038005,28038145-28038260,28038514-28038757,
           28039129-28039216,28039513-28039588,28040126-28040164,
           28040347-28040405,28041292-28041529
          Length = 493

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 173 YTVPWGFNGFINYIK 217
           Y VPWG  G +NYIK
Sbjct: 377 YIVPWGMYGCVNYIK 391


>01_02_0117 - 11262246-11262477,11264094-11264212
          Length = 116

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +2

Query: 20  VNRSHAERYDNILIQAHNSXIRIHTSTRTLKAR*HIILFKARFNLNSARDRYTVPWGFNG 199
           VNR+  + ++ + I+     I+  T+ RT  AR H+     R +  S  D     +GF+ 
Sbjct: 42  VNRAKTDLFNYLYIR----YIKPGTNLRT-DARMHMASSNGRSSNGSQGDSKLELFGFDS 96

Query: 200 FINYIKITRLDLIFY 244
            +N + + R D +FY
Sbjct: 97  LVNILGLKRYDDLFY 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,935,550
Number of Sequences: 37544
Number of extensions: 216512
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)