Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b01
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    70   2e-13
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   1.2  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   2.1  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    27   2.8  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    26   3.7  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 70.1 bits (164), Expect = 2e-13
 Identities = 31/68 (45%), Positives = 46/68 (67%)
 Frame = -1

Query: 552 GLKLGDIDLVEINEAFAAQTLACIKELNLDESKLNVNGGAIAMGHPVGASGARITAHLAH 373
           G++   +D  EINEAF+   +A  K L LD  ++N+NGG +AMGHP+G+SG+RI   LA+
Sbjct: 307 GIEASQVDYYEINEAFSVVAVANTKILGLDPERVNINGGGVAMGHPLGSSGSRIICTLAY 366

Query: 372 ELRRRGLK 349
            L ++  K
Sbjct: 367 ILAQKDAK 374


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 359 RRLSS*AK*AVILAPDAPTGCPIAMAPPFTFNLLSSKFSSLIQARV*AANASL-ISTKSI 535
           RR+S+ +K    L+P      PI   PP   NL  SK S+ ++      NAS+ +ST + 
Sbjct: 319 RRISTSSKSLYELSPSKFKSIPITSNPPPMLNL--SKGSTSVEPTFCETNASVALSTVTS 376

Query: 536 SPSF 547
           +P F
Sbjct: 377 TPVF 380


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 446 TFNLLSSKFSSLIQARV*AANASLISTKSISPSFKP 553
           T ++ SS  SS+I +    A +S IST S+SPS  P
Sbjct: 132 TVDISSSTSSSVINSPTGTAVSSQISTLSMSPSSTP 167


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 396 WPQTRQQDV--P*RWPLRSHLIYFRLSLAL*YKLESERRTL 512
           WPQ    D   P R P+ SHLIY ++  +   K++ +   L
Sbjct: 452 WPQVGSYDTISPYRNPVNSHLIYSQIQQSSPKKIDEQLHDL 492


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 498 QTLACIKELNLDESKLNVNGGAIAMGHPVGASGARI-TAHLAHELRR 361
           ++ A  K    D+S LN N   +  G    AS AR   A  A EL++
Sbjct: 324 KSAASAKSTKSDDSNLNANFARLGFGQFAAASNARAKAAAKARELKK 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,118
Number of Sequences: 5004
Number of extensions: 44093
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)