Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b01
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004...    92   4e-19
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628...    90   1e-18
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391...    70   2e-12
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54...    66   3e-11
10_02_0079 + 5016115-5016936                                           29   2.9  
02_05_0551 + 29907768-29907909,29907995-29909280                       28   5.1  

>02_05_1230 -
           35099942-35100018,35100138-35100221,35100367-35100475,
           35100564-35100687,35101157-35101253,35101375-35101507,
           35101654-35101731,35101821-35101928,35102011-35102078,
           35102181-35102279,35102379-35102505,35102623-35102707,
           35103297-35103373,35103482-35103562
          Length = 448

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 41/66 (62%), Positives = 54/66 (81%)
 Frame = -1

Query: 552 GLKLGDIDLVEINEAFAAQTLACIKELNLDESKLNVNGGAIAMGHPVGASGARITAHLAH 373
           GL++ DIDL E+NEAFA+Q + C  +L LD SK+NVNGGAIA+GHP+GA+GAR  A L +
Sbjct: 346 GLQIEDIDLFELNEAFASQFVYCCNKLGLDRSKVNVNGGAIALGHPLGATGARCVATLLN 405

Query: 372 ELRRRG 355
           E++RRG
Sbjct: 406 EMKRRG 411


>10_08_0258 +
           16261454-16261540,16261636-16261712,16262734-16262818,
           16262931-16263057,16263147-16263245,16263343-16263410,
           16263514-16263621,16263727-16263804,16263921-16264053,
           16264138-16264234,16264465-16264588,16264668-16264776,
           16264899-16264982,16265071-16265180
          Length = 461

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 39/66 (59%), Positives = 55/66 (83%)
 Frame = -1

Query: 552 GLKLGDIDLVEINEAFAAQTLACIKELNLDESKLNVNGGAIAMGHPVGASGARITAHLAH 373
           GL++ D+DL EINEAFA+Q + C K+L LD +K+NVNGGA+A+GHP+GA+GAR  + L +
Sbjct: 348 GLQIDDVDLFEINEAFASQYVYCCKKLGLDPAKVNVNGGAMALGHPLGATGARSVSTLLN 407

Query: 372 ELRRRG 355
           E++RRG
Sbjct: 408 EMKRRG 413


>09_02_0075 +
           3916373-3916400,3916760-3916858,3916943-3917116,
           3917207-3917312,3917671-3917809,3918457-3918534,
           3918863-3918928,3919213-3919298,3919939-3920038,
           3920245-3920355,3920457-3920498,3920671-3920757,
           3921013-3921102
          Length = 401

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 38/87 (43%), Positives = 50/87 (57%)
 Frame = -1

Query: 552 GLKLGDIDLVEINEAFAAQTLACIKELNLDESKLNVNGGAIAMGHPVGASGARITAHLAH 373
           GL+   +D  EINEAF+A  LA  K L +   K+NV+GGA+++GHP+G SGARI   L  
Sbjct: 313 GLESSRVDYYEINEAFSAVALANQKLLGIPSEKINVHGGAVSLGHPLGCSGARILVTLLG 372

Query: 372 ELRRRGLKRXXXXXXXXXXXXIALLLE 292
            LR +G K              AL+LE
Sbjct: 373 VLREKGGKIGVAGVCNGGGGASALVLE 399


>01_01_0071 +
           548255-548399,548478-548651,548787-548892,548992-549130,
           549216-549293,549395-549460,550061-550201,550417-550527,
           550614-550655,550739-550825,551033-551118,551681-551684
          Length = 392

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 36/89 (40%), Positives = 48/89 (53%)
 Frame = -1

Query: 552 GLKLGDIDLVEINEAFAAQTLACIKELNLDESKLNVNGGAIAMGHPVGASGARITAHLAH 373
           GL+   ID  EINEAF+   LA  K L +   KLN++GG +++GHP+G SGARI   L  
Sbjct: 304 GLQTSQIDYYEINEAFSVVALANQKLLGIPSGKLNLSGGGVSLGHPIGCSGARIIVTLLG 363

Query: 372 ELRRRGLKRXXXXXXXXXXXXIALLLETI 286
            LR +  K              AL++E I
Sbjct: 364 ILRHKNGKIGVAGVCNGGGGASALVVELI 392


>10_02_0079 + 5016115-5016936
          Length = 273

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +2

Query: 287 IVSSSKAIPCPPPMHAEPIPLFKPRR--LSS*AK*AVILAPDAPTGCPIAMAPP 442
           I S   A P PP      IP   P    +S  A  A   AP   T CP+   PP
Sbjct: 11  IASGGLAAPAPPTNPRNAIPAANPAANPISGAAHSAPANAPPPATECPVPPPPP 64


>02_05_0551 + 29907768-29907909,29907995-29909280
          Length = 475

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 281 GYIVSSSKAIPCP-PPMHAEPIPLFKPRRLSS 373
           G  VS  +  PCP PP +++  PLF P R SS
Sbjct: 162 GSDVSWVQCKPCPSPPCYSQRDPLFDPTRSSS 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,179
Number of Sequences: 37544
Number of extensions: 294453
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)