Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11b01
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical p...   100   2e-21
U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical pr...    76   2e-14
U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa ...    72   4e-13
U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical pr...    67   8e-12
M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical pr...    54   6e-08
D86473-1|BAA20377.1|  412|Caenorhabditis elegans 3-keto-acyl-CoA...    36   0.023
AL023847-7|CAA19548.1|  412|Caenorhabditis elegans Hypothetical ...    36   0.023
AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine re...    32   0.37 
AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical...    28   4.6  
Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical
           protein F53A2.7 protein.
          Length = 394

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 48/89 (53%), Positives = 60/89 (67%)
 Frame = -1

Query: 552 GLKLGDIDLVEINEAFAAQTLACIKELNLDESKLNVNGGAIAMGHPVGASGARITAHLAH 373
           GLK+GDID+ E+NEAFA Q LA  +EL +   KLNVNGGAIA+GHP+ ASGARI+ H+ H
Sbjct: 306 GLKIGDIDIFEVNEAFAPQALAVQRELGIPMEKLNVNGGAIALGHPLAASGARISTHIVH 365

Query: 372 ELRRRGLKRXXXXXXXXXXXXIALLLETI 286
           EL RR +K             IA+L E +
Sbjct: 366 ELHRRNVKYGIGSACIGGGQGIAILFEKV 394



 Score = 34.3 bits (75), Expect = 0.070
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -3

Query: 610 PSIMGIGPVPAINNLLSATGLK 545
           P+IMGIGP PAI  +L  +GLK
Sbjct: 287 PTIMGIGPAPAIREVLKKSGLK 308


>U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical
           protein T02G5.7 protein.
          Length = 390

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 36/62 (58%), Positives = 46/62 (74%)
 Frame = -1

Query: 552 GLKLGDIDLVEINEAFAAQTLACIKELNLDESKLNVNGGAIAMGHPVGASGARITAHLAH 373
           GL++ DI L E+NEAFA   LA IKELN++ S +NV GGA+A+GHP+G SG RI   LA+
Sbjct: 304 GLQVSDIALWELNEAFAVTVLAFIKELNIEPSVVNVKGGAVAIGHPLGMSGLRIVNSLAY 363

Query: 372 EL 367
            L
Sbjct: 364 SL 365


>U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa
           thiolase protein 1 protein.
          Length = 407

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 31/63 (49%), Positives = 45/63 (71%)
 Frame = -1

Query: 552 GLKLGDIDLVEINEAFAAQTLACIKELNLDESKLNVNGGAIAMGHPVGASGARITAHLAH 373
           G+K  D+   E+NEAF+   LA IK+L +D S +N +GGA+++GHP+G SGAR+  HL H
Sbjct: 321 GVKQSDVAQWEVNEAFSCVPLAFIKKLGVDPSLVNPHGGAVSIGHPIGMSGARLITHLVH 380

Query: 372 ELR 364
            L+
Sbjct: 381 TLK 383


>U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical
           protein T02G5.4 protein.
          Length = 460

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
 Frame = -1

Query: 573 TIYYPPL----GLKLGDIDLVEINEAFAAQTLACIKELNLDESKLNVNGGAIAMGHPVGA 406
           T+ +P L    G++  D+   E+NEAF+   LA IK+L +D S +N +GGA+++GHP+G 
Sbjct: 363 TLLFPNLLQSAGVEQSDVAQWEVNEAFSCVPLAFIKKLGVDPSLVNPHGGAVSIGHPIGM 422

Query: 405 SGARITAHLAHEL 367
           SGA +  HL H L
Sbjct: 423 SGASLITHLVHTL 435


>M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical
           protein B0303.3 protein.
          Length = 448

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 17/80 (21%)
 Frame = -1

Query: 552 GLKLGDIDLVEINEAFAAQTLACIKELNLDE-----------------SKLNVNGGAIAM 424
           GL L D+D+ EI+EAFA Q LA +  ++ D                   KLN+ GG++++
Sbjct: 341 GLTLKDVDVFEIHEAFAGQVLANLNAMDSDYFCKEQMKRSGKFGRVPMDKLNLWGGSLSI 400

Query: 423 GHPVGASGARITAHLAHELR 364
           GHP GA+G R+  H AH L+
Sbjct: 401 GHPFGATGVRLATHSAHRLK 420


>D86473-1|BAA20377.1|  412|Caenorhabditis elegans 3-keto-acyl-CoA
           thiolase protein.
          Length = 412

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -1

Query: 453 LNVNGGAIAMGHPVGASGARITAHLAHELRRRGLKR 346
           +N +GG I+ GHP+GA+G      L+++LR +  KR
Sbjct: 341 INPSGGLISKGHPIGATGVAQAVELSNQLRGKCGKR 376


>AL023847-7|CAA19548.1|  412|Caenorhabditis elegans Hypothetical
           protein Y57A10C.6 protein.
          Length = 412

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -1

Query: 453 LNVNGGAIAMGHPVGASGARITAHLAHELRRRGLKR 346
           +N +GG I+ GHP+GA+G      L+++LR +  KR
Sbjct: 341 INPSGGLISKGHPIGATGVAQAVELSNQLRGKCGKR 376


>AF016415-7|AAW88412.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 33 protein.
          Length = 296

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 165 LQARIQWRLYFCMCNNNL*MYFFLYIFWTITCFNVLWF 52
           L AR+ W++     N N  M  F Y F T TCF    F
Sbjct: 22  LNARLIWKIVLKKANRNDDMQLFYYRFLTDTCFGTFLF 59


>AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical
           protein Y43F8C.14 protein.
          Length = 709

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 293 SSSKAIPCPPPMHAEPIPLFKPRRLSS 373
           S+ K   C PP H+EP P F+   +SS
Sbjct: 289 STPKPAMCRPPKHSEPPPAFQDSFVSS 315


>Z70756-8|CAA94795.2|  212|Caenorhabditis elegans Hypothetical
           protein T06E4.9 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 284 YIVSSSKAIPCPPPMHAEPIPLF-KPRRLSS*AK*AVILAPDAPTGCPIAMAPPFTF 451
           +  S +  +  P P+ A P P+F  PR + +    A  LAP AP   P+   P F +
Sbjct: 102 FFASPAPVLAAPAPLLAPPAPVFAAPRPVFA----APALAPVAPM-APVLRGPAFAY 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,634
Number of Sequences: 27780
Number of extensions: 254061
Number of successful extensions: 745
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)