Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a22
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   3.1  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   4.0  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      25   7.1  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.1  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   7.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.1  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    25   9.3  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = -2

Query: 483 KDKDGITQLQEALKDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMNVNKIF 307
           K +   +Q    LK   T  T   S+ ST  D++ LP+  ++++TN K    N+N++ + 
Sbjct: 774 KTRHDSSQSARQLKARSTATTISISL-STVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLS 832

Query: 306 N---NDAQITRLLK 274
           +   N   + +L+K
Sbjct: 833 SSTCNANSVNKLMK 846


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/56 (23%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -2

Query: 576 DYKYGESAALNAQLIE-IPYKGDQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQ 412
           + ++G +A +++ LIE +  + +++ +I + P+D +   Q+Q   +  + L+ AQ+
Sbjct: 660 EQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQR 715


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 437 LRRWKRLSKACIAPKSICIFPNSKLKRRRISKMF 336
           LRR++R+S A   PK+     NS ++ R+   MF
Sbjct: 27  LRRFRRISNASTIPKN--YLNNSTVENRKYKTMF 58


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 330 NMNVNKIFNNDAQITRLLKGESLSVS 253
           +++ NKI N    +TR LKG +LS++
Sbjct: 847 SVSENKILNRSFSLTRSLKGLALSLA 872


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
 Frame = -2

Query: 561 ESAALNAQLIEIPYKGDQSSLI--------VVLPKDKDGITQLQEALKDPKT-LETAQ-Q 412
           E  A  + L+ I + GD   ++        V LPKDK G+   +EAL    T  E A  Q
Sbjct: 513 EGVARLSHLLNIEFLGDLLQVLRELVMDDTVFLPKDKSGVQATREALLTVSTAFEIASAQ 572

Query: 411 SMYSTEVDLYLPKF 370
            +    +DL L  F
Sbjct: 573 GVGKLNLDLDLGLF 586


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
 Frame = -2

Query: 570  KYGESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKD--------------PK 433
            K  E   +N +L  +  K  +SSL V +  +   +TQL E  K+               K
Sbjct: 851  KVSELKEVNGKL-SLDLKNLRSSLNVAISDNDQILTQLAELSKNYDSLEQESAQLNSGLK 909

Query: 432  TLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNKIFNNDAQITRLLKGESLSVS 253
            +LE  +Q +++   +L++   K+  +  +++  S+    K+     +I+  LK E++S S
Sbjct: 910  SLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEEISN-LKEENMSQS 968

Query: 252  EAI 244
            +AI
Sbjct: 969  QAI 971


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 422 RLSKACIAPKSICIFPNSKLKRRRISKMF 336
           RLS  C   K    F     KR+R+SK F
Sbjct: 352 RLSDVCFEEKVYTDFSKKGSKRKRVSKKF 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,333
Number of Sequences: 5004
Number of extensions: 39013
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)