Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt11a22
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 61 6e-10
11_01_0750 - 6315126-6315896,6316371-6316784 48 6e-06
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 44 1e-04
11_02_0012 - 7346282-7347136,7347234-7347593 42 6e-04
11_02_0011 - 7337618-7338496,7338596-7338991 40 0.001
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 28 7.3
05_01_0488 - 4070506-4072277,4072455-4072557 28 7.3
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 61.3 bits (142), Expect = 6e-10
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 10/166 (6%)
Frame = -2
Query: 546 NAQLIEIPYK--GD--QSSLIVVLPKDKDGITQLQEALK-DPKTLETAQQSMYSTEVDLY 382
N +++++PY+ GD Q S+ ++LP+ +DG+ L E L +P+ LE + T
Sbjct: 296 NLKVLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEKLNSEPEFLEKHIPTRQVTVGQFK 355
Query: 381 LPKFKIETETNLKDVLSNMNVNKIFNNDAQITRLL---KGESLSVSEAIQKXXXXXXXXX 211
LPKFKI D+L ++ ++ F+++A +T ++ +G++L VS K
Sbjct: 356 LPKFKISFGFEASDLLKSLGLHLPFSSEADLTEMVDSPEGKNLFVSSVFHKSFVEVNEEG 415
Query: 210 XXXXXXXXXXXESLSAVISEPTVFDANHPFVFFLTGE--GVNLFNG 79
SA I+E F A+HPF+F + + GV LF G
Sbjct: 416 TEAAAATAAVITLRSAPIAED--FVADHPFLFLIQEDMTGVVLFVG 459
Score = 37.1 bits (82), Expect = 0.012
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Frame = -2
Query: 540 QLIEIPYK--GD--QSSLIVVLPKDKDGITQLQEAL-KDPKTLETAQQSMYSTEVDLY-L 379
+++++PY GD Q S+ ++LP+ +DG+ L E L +P+ +E M V + L
Sbjct: 550 KVLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEKLNSEPEFMEN-HIPMRPVHVGQFKL 608
Query: 378 PKFKIETETNLKDVLSNMNVNKIFNNDAQITRLLK---GESLSVSEAIQKXXXXXXXXXX 208
PKFKI +L + + +F ++ + ++ ++L VS K
Sbjct: 609 PKFKISFGFGASGLLKGLGLPLLFGSEVDLIEMVDSPGAQNLFVSSVFHK---SFIEVNE 665
Query: 207 XXXXXXXXXXESLSAVISEPTVFDANHPFVFFLTGE--GVNLFNG 79
S+ F A+HPF+F + + GV LF G
Sbjct: 666 EGTEATAAVMVSMEHSRPRRLNFVADHPFMFLIREDVTGVILFIG 710
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 48.0 bits (109), Expect = 6e-06
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Frame = -2
Query: 546 NAQLIEIPYKGDQS----SLIVVLPKDKDGITQL-QEALKDPKTLETAQQSMYSTEVDLY 382
N ++I++PYK ++ S+ + LP D DG+ +L Q+ +P LE + V +
Sbjct: 225 NFKVIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPMFLEQHLPTE-KCHVGIS 283
Query: 381 LPKFKIETETNLKDVLSNMNVNKIFNNDAQITRLLKGES----LSVSEAIQKXXXXXXXX 214
+P FKI + ++KD L +M + F +A+ + ++K + L +S+ + K
Sbjct: 284 VPNFKISFQIDVKDFLKDMGLELPFLREAEFSDMIKEDDSSGPLFLSDVLHKAVLEVDQK 343
Query: 213 XXXXXXXXXXXXESLSAVISEPTVFDANHPFVFFLTGE--GVNLFNG 79
+ L A F A+HPF F + E G +F G
Sbjct: 344 GIEETSVSMGLGKPLPA-----QHFKADHPFFFMIREEVSGTVIFMG 385
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 44.0 bits (99), Expect = 1e-04
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Frame = -2
Query: 540 QLIEIPY-KGD---QSSLIVVLPKDKDGITQLQEALK-DPKTLETAQQSMYSTEVDLYLP 376
+++++PY KG Q S+ ++LP+ +DG+ L L +P+ LE + T LP
Sbjct: 90 KVLKLPYQKGRDLRQFSMYILLPEAQDGLWSLAAKLNSEPEFLEKRIPTRQVTVGKFKLP 149
Query: 375 KFKIETETNLKDVLSNMNVNKIFNNDAQITRLL---KGESLSVSEAIQKXXXXXXXXXXX 205
KFKI D+L + + F++ A +T ++ + +L VS K
Sbjct: 150 KFKISFGFEASDLLKILGLQLPFSSKADLTGMVGSPERHNLFVSSLFHKSFVQVDEEGTE 209
Query: 204 XXXXXXXXXESLSAVISEPTVFDANHPFVFFLTGE--GVNLFNG 79
SA ++ F A+HPF+F + + GV LF G
Sbjct: 210 AAAASAAVVSFRSAPVT--VDFVADHPFLFLIREDMTGVVLFIG 251
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = -2
Query: 390 DLYLPKFKIETETNLKDVLSNMNVNKIFN-NDAQITRLLKGESLSVSEAIQKXXXXXXXX 214
DL +P+FK+ + + +VL M + F+ ++ ++ GE + V + + +
Sbjct: 289 DLRVPRFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGMIDGELVVVEKVMHRAVVEVNEE 348
Query: 213 XXXXXXXXXXXXESLSAVISEPTVFDANHPFVFFLTGE 100
+ L ++ P F A+HPF FF+ E
Sbjct: 349 GTEAAAATACTMKFLCLTLTSPVDFVADHPFAFFVVEE 386
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 40.3 bits (90), Expect = 0.001
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Frame = -2
Query: 504 SLIVVLPKDKDGITQLQEALKDPKTLETAQQSMYST---EV-DLYLPKFKIETETNLKDV 337
S+ + LP ++DG+ L + + + + + T EV DL +P+FK+ + + V
Sbjct: 263 SMYIFLPDERDGLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFKVSFYSQINGV 322
Query: 336 LSNMNVNKIFN-NDAQITRLL-----KGESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXE 175
L M V F+ +A ++ + +G L V E +
Sbjct: 323 LQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEGTEAAASTACTIR 382
Query: 174 SLSAVISEPTVFDANHPFVFFLTGE--GVNLFNG 79
LS +S P F A+HPF FF+ E G LF G
Sbjct: 383 LLS--MSYPEDFVADHPFAFFVVEETSGAVLFAG 414
>07_01_0464 -
3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 435 KTLETAQQSMYSTEVDLYLP-KFKIETETNL 346
K +E A Q +YSTEV+L+ F +ET+T L
Sbjct: 809 KGMEEADQKIYSTEVNLHSQYYFYMETQTAL 839
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/75 (24%), Positives = 39/75 (52%)
Frame = -2
Query: 561 ESAALNAQLIEIPYKGDQSSLIVVLPKDKDGITQLQEALKDPKTLETAQQSMYSTEVDLY 382
E+++L L E+ K ++ +L V+ +KD I +L+E++ + + TE+D
Sbjct: 229 ETSSLQKDLDEV--KSEKEALEAVVLVNKDEIDRLKESMVSAAKQFEVELAHRDTEIDKC 286
Query: 381 LPKFKIETETNLKDV 337
+ ++ +E L D+
Sbjct: 287 KQELEVLSEKYLHDI 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,175,797
Number of Sequences: 37544
Number of extensions: 219173
Number of successful extensions: 397
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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