Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a17
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    28   0.87 
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    25   6.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.1  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 45  FRICYIFSSMFEYRILSGRCYRC 113
           F  CY+FSS F Y+  S R Y C
Sbjct: 149 FAFCYLFSSYFSYK--SSRQYTC 169


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -2

Query: 450 NKNGLESDYCFMHHASSSFGCPSTCHRWCRRLGRLEQWRSQPLDTSM 310
           N+  L   +CF H+  +S+G  ++  R+       + W   P+D S+
Sbjct: 195 NREALICSHCFHHNGLASYGEKASDVRYVCLF--CKAWNGPPIDKSL 239


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 83  ILKHTRKYITDTKKNFFG 30
           IL   + Y+T+TKK+ +G
Sbjct: 777 ILSQNKNYLTETKKDIYG 794


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,251
Number of Sequences: 5004
Number of extensions: 37759
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)