Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a16
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    29   0.89 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    28   1.6  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.3  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 181 FSKNVSSYFDILQLVYVYYLLSMVTVSLNVYWCLMYVYIIEFWN*NSKMLFKVSK 17
           F     SYFD++    V  LLSM T         ++V  +++W  +S  +FK+ K
Sbjct: 635 FVSEAFSYFDMVPFEKVVQLLSMKTSD------TLFVDFVDYWTKSSSEIFKMLK 683


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 21  DTLNSILEFQFQNSIIYTYIKH 86
           + +N  LE +F+N  IYTYI H
Sbjct: 54  EEINKNLELRFRNGEIYTYIGH 75


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 240 IYVWTCSEYVWYDICLKYI--FSLKMSV 163
           + +W C  +V+Y  C+ +I  +S+ +SV
Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSV 238


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 332  MTYWNMQCSLMQRCSPIFQVF 270
            +TY N   S +++C+ IF +F
Sbjct: 1712 LTYLNQNVSSLEKCNQIFSIF 1732


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,992
Number of Sequences: 5004
Number of extensions: 63224
Number of successful extensions: 152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)