Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt11a16
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    29   2.5  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U64835-3|AAO25999.1|  338|Caenorhabditis elegans Serpentine rece...    28   5.9  

>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 198 KYHTRRIHYMSIHKSMNHIMHFLNKYLEYWTASLHQAALHIPIRHLPYMYTLLTICSQPC 377
           + H R +  + I    + I +  + Y+ Y   ++HQ      I H+ Y+Y + T    P 
Sbjct: 4   RQHYRSLSTVDIIYIKSTIYYIYHIYIPYTIYTIHQ------IYHIYYIYHIYTYTKSPI 57

Query: 378 FYIHLI 395
           ++IH I
Sbjct: 58  YHIHHI 63


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 554  HNCIYEYYSNALSANTYKIWCCQCQF*TITSSFFNYLH 441
            HN  Y +Y+  L  N Y+ W  Q  F ++ +S+  + H
Sbjct: 1330 HNYSYPHYNIQLPQNQYQSWTPQFDFHSMNTSYGEHGH 1367


>U64835-3|AAO25999.1|  338|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 27 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -2

Query: 169 VSSYFDILQLVYVYYLLSMVTVSLNVYWCLMYVYIIE-FWN*N-SKMLFKV 23
           ++ YF +   + +  +LS +T+S+N Y  +MY    +  W+ N SK++F V
Sbjct: 111 LTPYFTLYMYLQLSKMLSTLTMSINRYTSIMYPLAHKPMWSNNFSKVIFAV 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,030,414
Number of Sequences: 27780
Number of extensions: 347604
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)